Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7299g00002 ATGGATAATGAGGTGACAATTGAAGATGATAATTGTGTTGCTGAAGAGGGAAAACATTTGAATAGTAAAGCCATGAATGATGATGTTGCAATTGCTCATGCAAATGGTGTTGCTGGAGAGGTTAGGGTCTTGAAAAGTGAACCCTTTAGTAATGGGGTGGGAGTTGGAGATAAAGGTGTTTCTGGTGGAGTGGAATGTTTGCGAACTTATAAGAGGCGTAAGAAGTCAAGTTCAAGAGGCAAAACTCACGAACAATGCAGAGCAGGCATGGCAACTGCAAGTGGGATAGCGGATCAGGATGTGAAGAAACCATGTGATCTAGCTTTAGGCAATACTTCAGATGATTGTTCCCAAGGACAGTGGGGAAATATTGTACTAAATCACTTATATCAGTCATTAGGTGATAGCAATGGTGGTGTGGAGGGATGCATAAGGGAAGCACTTAATCCTAAACAAAACCTTGCCCCTACTGTTATGGAAACCTTTCTAATTGAAAAAAATGGTAAAAGATGCTCTTCGCAATCTGAGCTGCTTTCTCATAGAACAGGGAAGGAAGCTAATCGACATGCAGATGTCATGTGTAATGGATGTTCCAGTGAATTACCTGACCATGGTGTGACTGAGATGTGTCAACGTGTGCTCTGTAATATCTTAACCTCAGAAAAATTCCGCTCATTGTGTAAGGCTTTGCTTGAAAATTTCCAGGGAATGAAGCCTGAAAGTGTATTTGACTTTACGATCATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCACCAGCACTCTTCTTGTCAGATATTCAACAGGTTTGGGGAAAGCTTCAAGACACGGGTAACGAGATTGTTGCTCTTGCCAAGAGCCTATCAAGCATGTCAACAACTTCCTACTCGGAGCTGGTAGGAGTTTCAGCACCGAGCACATTTCAAGATGAGAAGCAACCGTCCTGCAACCGAGAACTTGGCTTTCTCGTGAAACCAGAGCAGACGCAAGACATTTCTATGTACAGAATCGGCAGTTGCAGCCGTTGTGGAGAGAAGGCAGATGACAAAGACTGTTTGGTTTGTGATTCATGTGAGGAGATATTCCATGTGTCCTGTATTGAGCCGTTAGTGAAAGAAATAATACCCCACAAAAGCTGGTATTGTGCCAGGTGTACTGCTAATGGGATTGGATCTCCACATGAGCATTGTGTACTATGTGAAAGGTTAAATGATGAACAGACCCCAAATGGCATAATTGGGGATGAAAGCTTTCCTACAATTAAGGAAACAAAACATGAATTTGAAGAAAATTCAAATTGCACCTCTGATGAGATTGAAGTTTCTGTAGGTGAGAAAACAACTCCCGTTTGCAAAATTTGCAGAAATGAAGTGGATGGTAAAAAGAGAAAAAAGGTGAAAATATGTGGTCATAAGTTTTGCTCCAACAAGTACTACCATGTAAGGTGTTTAACAAAGAAGCAGTTAAAGTCATACGGTCACTGTTGGTACTGCCCTTCTTGTTTATGCTGTGTTTGCTTAATTGATCGAGATGATGATCAGATCGTTATCTGTGATGGCTGTGATCGTGGATATCACATCTATTGCTTGACACCTCCACAGTCTTCTATTCCTAGCGGGAAATGGTTCTGCAGACTCTGTGATGCTGGGATACAAGCCATTCACAAGGCTAAAAAGGCGTATGAAAGTAACGAGCCAAGCAGAAAAGGGAGAGATGCTGCTAAGCCAAATGCTAAACTTGACAAGAAACACAGAAATAAACGAGCAAGAGAATTGGAAAGAGGTGGTGCAATGGACATGCTTTTAACCGCAGCCAATACTCTGAATTTTGAAGAGAAAAAGGCAGCAATCCAGATTGAGTCACAGACAACATGA 1878 0.4169 MDNEVTIEDDNCVAEEGKHLNSKAMNDDVAIAHANGVAGEVRVLKSEPFSNGVGVGDKGVSGGVECLRTYKRRKKSSSRGKTHEQCRAGMATASGIADQDVKKPCDLALGNTSDDCSQGQWGNIVLNHLYQSLGDSNGGVEGCIREALNPKQNLAPTVMETFLIEKNGKRCSSQSELLSHRTGKEANRHADVMCNGCSSELPDHGVTEMCQRVLCNILTSEKFRSLCKALLENFQGMKPESVFDFTIMNSRMKEQAYEQSPALFLSDIQQVWGKLQDTGNEIVALAKSLSSMSTTSYSELVGVSAPSTFQDEKQPSCNRELGFLVKPEQTQDISMYRIGSCSRCGEKADDKDCLVCDSCEEIFHVSCIEPLVKEIIPHKSWYCARCTANGIGSPHEHCVLCERLNDEQTPNGIIGDESFPTIKETKHEFEENSNCTSDEIEVSVGEKTTPVCKICRNEVDGKKRKKVKICGHKFCSNKYYHVRCLTKKQLKSYGHCWYCPSCLCCVCLIDRDDDQIVICDGCDRGYHIYCLTPPQSSIPSGKWFCRLCDAGIQAIHKAKKAYESNEPSRKGRDAAKPNAKLDKKHRNKRARELERGGAMDMLLTAANTLNFEEKKAAIQIESQTT 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7299g00002 625 MobiDBLite consensus disorder prediction 563 591 - -
Vium7299g00002 625 PANTHER OS02G0192300 PROTEIN 278 406 - -
Vium7299g00002 625 SUPERFAMILY FYVE/PHD zinc finger 503 551 IPR011011 -
Vium7299g00002 625 Pfam PHD-finger 504 549 IPR019787 -
Vium7299g00002 625 Pfam PHD-finger 341 388 IPR019787 -
Vium7299g00002 625 ProSiteProfiles Zinc finger RING-type profile. 452 502 IPR001841 -
Vium7299g00002 625 Gene3D - 229 389 - -
Vium7299g00002 625 SUPERFAMILY FYVE/PHD zinc finger 331 388 IPR011011 -
Vium7299g00002 625 FunFam PHD finger protein EHD3 isoform A 228 390 - -
Vium7299g00002 625 ProSiteProfiles Zinc finger PHD-type profile. 501 551 IPR019787 -
Vium7299g00002 625 ProSiteProfiles Zinc finger PHD-type profile. 338 389 IPR019787 -
Vium7299g00002 625 ProSitePatterns Zinc finger PHD-type signature. 341 386 IPR019786 -
Vium7299g00002 625 MobiDBLite consensus disorder prediction 563 580 - -
Vium7299g00002 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 554 IPR013083 -
Vium7299g00002 625 SMART PHD_3 340 387 IPR001965 -
Vium7299g00002 625 SMART PHD_3 504 549 IPR001965 -
Vium7299g00002 625 SMART PHD_3 451 503 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7299g00002 Vium-Chr7299 38173 52421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7299g00002 503 572 C2H2 Transcription Factor Family AT3G01460 45.833 1.20e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium7299g00002 PHD 5e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7299g00002 - - gmx:100795906 939.873