Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7284g00004 ATGGGTATTTCAAGGGATTCCATGCACAAGAGGCGTGCAACTGGAGGCAAGAAGAAGGCGTGGAGAAAGAAGAGAAAGTATGAGCTTGGACGCCAATCAGCAAACACCAAGTTGTCAAGCAACAAAACAATCCGGAGGATTCGCGTTAGAGGTGGTAATGTAAAATGGAGGGCACTGAGGTTGGATACTGGGAATTACTCATGGGGTAGTGAAGCAGTAACCCGCAAGACTCGTATTCTAGATGTTGTCTACAATGCCTCAAACAATGAGCTTGTGAGAACCCAGACCTTGGTCAAGAGTGCTATTGTTCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAACACTATGGTGTTGACATTGGCAGAAAAAAGAAAGCAGCAACCAAGAAGGACTCTACCGAGGAGGGTGATGCTGCTGCTGAAGAAGCAAAGAAAAGTAACCATGTGCAGAGAAAAATTGAGAAGCGCCAGAAAGATCGCAAACTTGATGCCCACATTGAAGAGCAATTTGGCGGTGGCAGATTGTTGGCATGTATTTCTTCTCGCCCTGGACAATGTGGCAGGGCCGACGGGTACATTCTGGAAGGTAAGGAGCTGGAGTTTTACATGAAGAAACTCCAGAAAAAGAAGGGAAAGGGTGCGGCTTAA 654 0.4679 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQSANTKLSSNKTIRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAATKKDSTEEGDAAAEEAKKSNHVQRKIEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7284g00004 217 MobiDBLite consensus disorder prediction 1 26 - -
Vium7284g00004 217 FunFam 40S ribosomal protein S8 161 214 - -
Vium7284g00004 217 NCBIfam ribosomal protein eS8 1 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vium7284g00004 217 CDD Ribosomal_S8e_like 5 196 - -
Vium7284g00004 217 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Vium7284g00004 217 MobiDBLite consensus disorder prediction 11 26 - -
Vium7284g00004 217 Gene3D - 161 212 - -
Vium7284g00004 217 Pfam Ribosomal protein S8e 5 196 IPR022309 -
Vium7284g00004 217 PANTHER 40S RIBOSOMAL PROTEIN S8 1 214 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vium7284g00004 217 Gene3D - 32 160 - -
Vium7284g00004 217 MobiDBLite consensus disorder prediction 125 162 - -
Vium7284g00004 217 FunFam 40S ribosomal protein S8 32 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7284g00004 Vium-Chr7284 108484 110959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7284g00004 1 205 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.981 1.85e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7284g00004 K02995 - gmx:100500112 386.726