Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7284g00001 ATGGAAAACCAGTTCTTCCTCAATGCTCCTCAGCTGCATTTTGACCCTTCACCACCTCCTTGTCCACCTTCTTGGCACTCACTCTCTTCTCCCATGGATGTTCAAGTTTTGAATTGCTCGGCTGAGAGGACACAGGATTGCTTTTACACTCCGGCATGGGACAAGTCAACGGATCATGCTGTTCAGTTTGATTCTGCACTCAGTTCAATGGTGTCTTCTCCTGCAGCTTCCAATTCCAACATGTCCAGTGAGAATTTTGTCATCAGGGAGTTGATTGGGAAATTGGGAAACATTGGTGGTGCCTCTGATGAGATCTCACCTCATTCTCAGCCTTTGGTTCCTGCATCTTCCTACATCAATGGCAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCCAAGCTGAGCTTGAACAAGATCCCCACAATGATGAATCACTTGGTGAAAGAGGGCATGCCCCCCAGTTTGAATTCCAGTGTGGCAGAATTCTCAACTGATCCTGGTTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGGGCCCCAGCAATGCTGAGTTGACTCACAGATCTTCTCCATTGGTGGAAAATGGAAAGCTCCCCAGAGTCTCGAGTAGTCCATCTCTCAAAGTGCTTGGATCTCAAATGAGTGCCCAGGAGAACAAGAATTCTCCATTGCAAGACCAAATGGAAGTGGCCAATTCTCAAGAGGAATCAACAATCTCGGAACAAATTCCAAATGGGGACAATGGGGTGAAACCTTCCCCATATGCGAATTCTAGAAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAGGAAACTTCAACCCCCACCAACCCCCCTATGGCTGCTGAAGCCAGTGAAGATTCAAATGCAAAGCGCAGCAAGCCTAACGAAGGTGAGGGCAATGAAAATGGCCAAGTGAAGGCAGAGGAAGAGTCCAAAGGGGTAACTAGTAATACAAATGATGACAAACAGAACAAGAGTAACTCAAAACCTCCAGAGCCTCCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGACAGTCACAGTCTTGCAGAAAGAGTCCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTGACAGGTAAAGCACTTATGCTTGATGAAATTATAAACTATGTCCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCGATGAAGTTGGCTTCTGTTAACACAAAGCTGGATTTTAGTATTGAGAGTCTAATCTCGAAAGATATATTTCAATCAAATAATTCTTTGGCACAGCCAATATTCCCACTAGATTCCTCAGCACCAGCCTTTTATGGGCAACACCCTCAACAAAACCCAGCAATCCACAGTAACATTCCTAATGGAACTGTGTCCCACACCTCAGTGGACCCATTGGATACTGGTTTGTGCCAAAGCATTGGCATGCAGTTATCTCACCTAAATGCCTTTAATGAAGGTGCCTCTCAGTATCCAATAGCATTCTCTGAAGGTGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGCAAATAGGAAAACACCAGTACAATCTCAGAGTTTCAATGGCTCAAATCAAGTACCCCTATGA 1680 0.4524 MENQFFLNAPQLHFDPSPPPCPPSWHSLSSPMDVQVLNCSAERTQDCFYTPAWDKSTDHAVQFDSALSSMVSSPAASNSNMSSENFVIRELIGKLGNIGGASDEISPHSQPLVPASSYINGNNSTNTSCYSTPLSSPPKLSLNKIPTMMNHLVKEGMPPSLNSSVAEFSTDPGFAERAAKFSCFGSRSFNGRTTQLGPSNAELTHRSSPLVENGKLPRVSSSPSLKVLGSQMSAQENKNSPLQDQMEVANSQEESTISEQIPNGDNGVKPSPYANSRKRKGPSKGKAKETSTPTNPPMAAEASEDSNAKRSKPNEGEGNENGQVKAEEESKGVTSNTNDDKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTKLDFSIESLISKDIFQSNNSLAQPIFPLDSSAPAFYGQHPQQNPAIHSNIPNGTVSHTSVDPLDTGLCQSIGMQLSHLNAFNEGASQYPIAFSEGDLHTIVQMGFGQTANRKTPVQSQSFNGSNQVPL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7284g00001 559 MobiDBLite consensus disorder prediction 305 335 - -
Vium7284g00001 559 FunFam Basic helix-loop-helix transcription factor 362 434 - -
Vium7284g00001 559 MobiDBLite consensus disorder prediction 214 265 - -
Vium7284g00001 559 MobiDBLite consensus disorder prediction 189 207 - -
Vium7284g00001 559 CDD bHLH_AtBPE_like 355 440 - -
Vium7284g00001 559 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 365 415 IPR011598 GO:0046983
Vium7284g00001 559 Gene3D - 362 437 IPR036638 GO:0046983
Vium7284g00001 559 SMART finulus 371 421 IPR011598 GO:0046983
Vium7284g00001 559 MobiDBLite consensus disorder prediction 189 356 - -
Vium7284g00001 559 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 433 IPR036638 GO:0046983
Vium7284g00001 559 Pfam Helix-loop-helix DNA-binding domain 369 416 IPR011598 GO:0046983
Vium7284g00001 559 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 245 473 IPR024097 GO:0006355
Vium7284g00001 559 MobiDBLite consensus disorder prediction 287 301 - -
Vium7284g00001 559 Coils Coil 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7284g00001 Vium-Chr7284 58146 61201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7284g00001 1 525 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.776 1.13e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium7284g00001 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7284g00001 - - gmx:100812081 882.478