Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7271g00002 ATGGCTATGATTCTGGATGCTGTTGTTGGACGAGTGCTTGATGAACTGCTGAGCACTGTTATTGCAATGAAAGACAGGGCAGTGAAGTTCAGAGCCACCCTGGAAAATTTGCATTCTATCCTCAAAAAAGTAGAACCGATGGCTAGGGAGATAGATGGTCTTAACAAGCGATTGGATAAACCAGCTACAGAAACGCAGAAGCTGATCGATGAGATGGAGAAGGGGAAGGAGCTTGTTATTGAGTGCTCCAAAGTTGATTGGTGGAATTGCTGTTATAAGGCCAGTTCCCAAGAGAAACTTCAAGACTTGATCGATTCTATTACTCTGTACTTTCAATTGGATATGCAAGGAAATATAAATGTCATTGTGCTGGAGAACCAGATGCTGCTGCATCAGATTCACGAGAAGCTTGTGGAGAATGTTCCGAGAAGGATTGCAGGCTTGTGCTCTCCACCTGAACCCCCAGCTTTCACTGTTGGGCTGGATGTTCATTTGAGGGCGTTGAAGTTCAAGTTGCTGAATAATCATCATGTGGGGTCAGTGCTCACAGTAACTGGAACAGGAGGTTCGGGAAAGTCAACGTTGGCCAAGAAGTTTTGTTCTGATGAGGAAGTTAAAGGTGAATTCAAGGACAACATATTCTTCATCTCCTTAGCGGAAGTGCCCAAGTTGAGCACCATAGTGGAGAGACTGTTTGAACACAATGGTTACGAGAAGCCACAGTTTCAAAGTGATGAGGGTGCAGTTGATCGATTGGAAAATTTGCTAAAACAGATTGGAAAAAACCCCATATTGTTGGTCTTGGACGGTGTTTTGCCAGAGTCAGCATCTCTAGTTGAGAAATTCGTGTTTCAGATCCCAAACTACAAGATTTTAGTGACATCAAGATTCACAATTAAAGGATTTGGGCAGCCATACGTGTTGAAATCACTGAATGAAGCTGATGCTTTAAACTTATTTCGCCACCATGCATCCCTGGACCAGACCAGCTTTAAGATTCCGGATACTATTGTGAAGAAGATAGCAAAAGGGTGCAGTGGTTCTCCCTTGGCACTTATAGTAACCGGAAAATCTTTAAGTCTTGAAGAACCAGTGGTTTGGCACAACAGGGCGAGGACATTGTCGAGGGGTCAATCTGTTCTTTCTTATAGTTCTAATAGCGATGGGCTTCTTACTTGCCTCCAAAAAAGCTTTGATGACTTGGATGCTAAGCTTGCTGAGAGTTTTATGGACCTGAGCTTATTTCCTGAAGCACAGAAGATACCCGCAGCAGCACTTGTTGATATTTATGCAGAACAGCGTGATGAAGACGATGACATTGCAATGGAGAATATCCATGACCTCGTCAAAAGGAACGTGGCTGATCTTGTTGTCACAAGGAATACTACGAGTGGAACAGTTGACTACAATTACCACTATGTTACGCAGCATGGTCTTCTTCGGGACCTAGCCATCCATCAAACAAGAAATTTGCCGACTGAGAAGAAGCATAGGCTAATAATTGACCTCAGAGGGAACAATATCCCCAAATGGTGGACTACACAGAATGAGTATCACATTGCAGCCCACTCATTATCCATATCAACTGATGAAGAATTCACTTCAGAGTGGTGCAACTTGCAGCCAAATGAGGTCAAGGTTCTAGTGATGAACCTTAGAGAAAAAAAGCGCTCTCTACCACCGTTCATGAAGAAAATGAATAAATTAAAAGTCCTGACAATAACGAATTATGACGTCAATCGTGCTGAGTTGGAGAATTTAGAGCTGCTTGATTATCTTTCTGATCTCAAAAGAATCAGGTTAGAGAAGGTTTCAATTCCTTTCCTTAGCAAGACTGGAGTGCCACTGAAGAATCTGCACAAGTTCTCTTTCTTTATGTGCAATGTGAACGAAGCCTTCAAAAACAGCACCATCAAAGTTTCTGATGTGCTTCCAAATTTGAAGGAGATGAACATTGATTACTGTGATATGGAGGAATTGCCGGCTGGACTCTCCGATACTGTTTCCCTAAAGAAGCTAAGCATCACAAACTGCCATAAACTTTCAAAACTTCCTACAGGAATTGGAAAGTTGGTGAATTTGGAATCATTGAGGCTTACTTCTTGTACCAAATTAGAAGAGTTGCCAGACAGCATCACAAGCCTTCATAAACTGAACTTTCTTGACATTTCTGACTGTGTAAGTCTTAGGATGTTACCAGAAAACATAGGGGAGCTGGGTAGTTTAGAAAGGTTGAATTGCAGAGGTTGCAACAGATTGTCTGAATTGCCATACTCAGTGAAGGACCTTGAGAGCTTAAGAGTGGTAGTATGCGATGAAGAGAGGGCTGCATTATGGGAACCTATCAGATCCATGTTTAGTGATCTAAAGCTAGAGGTAGTCCTAACCGATTTCAAACTAGATCCTCTTTTATAA 2415 0.4219 MAMILDAVVGRVLDELLSTVIAMKDRAVKFRATLENLHSILKKVEPMAREIDGLNKRLDKPATETQKLIDEMEKGKELVIECSKVDWWNCCYKASSQEKLQDLIDSITLYFQLDMQGNINVIVLENQMLLHQIHEKLVENVPRRIAGLCSPPEPPAFTVGLDVHLRALKFKLLNNHHVGSVLTVTGTGGSGKSTLAKKFCSDEEVKGEFKDNIFFISLAEVPKLSTIVERLFEHNGYEKPQFQSDEGAVDRLENLLKQIGKNPILLVLDGVLPESASLVEKFVFQIPNYKILVTSRFTIKGFGQPYVLKSLNEADALNLFRHHASLDQTSFKIPDTIVKKIAKGCSGSPLALIVTGKSLSLEEPVVWHNRARTLSRGQSVLSYSSNSDGLLTCLQKSFDDLDAKLAESFMDLSLFPEAQKIPAAALVDIYAEQRDEDDDIAMENIHDLVKRNVADLVVTRNTTSGTVDYNYHYVTQHGLLRDLAIHQTRNLPTEKKHRLIIDLRGNNIPKWWTTQNEYHIAAHSLSISTDEEFTSEWCNLQPNEVKVLVMNLREKKRSLPPFMKKMNKLKVLTITNYDVNRAELENLELLDYLSDLKRIRLEKVSIPFLSKTGVPLKNLHKFSFFMCNVNEAFKNSTIKVSDVLPNLKEMNIDYCDMEELPAGLSDTVSLKKLSITNCHKLSKLPTGIGKLVNLESLRLTSCTKLEELPDSITSLHKLNFLDISDCVSLRMLPENIGELGSLERLNCRGCNRLSELPYSVKDLESLRVVVCDEERAALWEPIRSMFSDLKLEVVLTDFKLDPLL 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7271g00002 804 Gene3D - 136 300 IPR027417 -
Vium7271g00002 804 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Vium7271g00002 804 Gene3D - 310 397 IPR042197 -
Vium7271g00002 804 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 2 800 IPR039203 GO:0050832
Vium7271g00002 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 412 IPR027417 -
Vium7271g00002 804 Pfam NB-ARC domain 164 399 IPR002182 GO:0043531
Vium7271g00002 804 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 7 118 IPR008808 -
Vium7271g00002 804 SUPERFAMILY RNI-like 556 769 - -
Vium7271g00002 804 PRINTS Disease resistance protein signature 713 729 - -
Vium7271g00002 804 PRINTS Disease resistance protein signature 181 196 - -
Vium7271g00002 804 PRINTS Disease resistance protein signature 258 272 - -
Vium7271g00002 804 PRINTS Disease resistance protein signature 345 359 - -
Vium7271g00002 804 Gene3D - 398 487 IPR036388 -
Vium7271g00002 804 Gene3D Ribonuclease Inhibitor 493 785 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7271g00002 Vium-Chr7271 2569 6575 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7271g00002 650 769 WRKY Transcription Factor Family AT4G12020 32.231 9.64e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7271g00002 - - vra:106755496 1296.95