Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7265g00010 ATGGATAAGCAAGTGGTTCTTCTTTCTCTCCTTATTTTCTTCTTCACTGTTTCCATATCTGGTGTTTCATCCACCACATGCCCCATGGATCTCAGCTACGTTGAGACCTTTCCCTGGGATGCTTCATCTTGCCGAGACCCTGTTGTTGATAAGGAGCACTGTTGTCAAGCTTTGCTCAGTGTAATTGGCATGGGGTTGGCCGAACACCTCAAAAACACTTCCTACTTTCAACTTCCTGATGTAAACACTTCCTCCATCTGCTTGTCAGATTTCCAAACCAAAGTCTCAGCCTTGTCAATCAACTCCTCTTTGGTCCCTTATTGTTTTCCTAGAGCTTCTGAGTTTGTTACCAACACTTCCACTTGTGCAGGAATCATAACTGTAGATGATTGGAAGAGTAAAGTGGGTATGATTAGCCCCTTAGACACTTCTTGCAATGGGGACATGAGTGATCAAACCCGTTGCAGCCTTTGTACTGATGCTGGTCTCAAAGTGACTTCTCACCTCAATAGTTTGGACCCAAATGGCACAAAGTGCTTTTACTTCACAGTTTTGTATGCCTCGGCTATTGTTAATCAGTATGGTCCTACAAATTTGGGCACCGCTGGTTGCATACTGGGCTTGCCGCTGTCTGTGAAAGGTTCATCGAATAAAAAACAAGAGCTGAAACTTGTTTTTGGGTTGGTGGGTGCTGTTACTGGTGTTGTGCTTGGTTTTGTGTTGATTTTGGTGTACAGAAAGTGGGATAAGAGAAGGAAGGAAGATAAGTATCACAGGTCGGTTGAAAACGGTGTGAGGAACAGTGTTTTGCCTAATACTGGTGCGAAATGGTTTCGCATATCGGAGCTTGAGCGAGCCACTGGTAAATTTTCTCAGAGGAATATGGTTGGCCAAGGTGGTGATGGGGTTGTGTACAAAGGGACTCTTTCAGATGGCACTGTGGTTGCGGTAAAGGAAATTTTTGATTTGGAGACAAAAGGGGATGAAGATTTCTGCTACGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTCCTCTTCGGGGCTGTTGCATTTCAAGTGATAATTTGAAAGGCAAGAGAAGGTTTCTGGTTTATGATTTCATGCCAAATGGCAGCCTCAGTTACCAGTTATCAGTTTCTGGTGCTAATAGGCTAACATGGCCACAAAGGAAGAACATAATCCTTGATGTGGCCAAGGGGCTTGCTTATTTGCATTATGAGATCAAACCCCCAATTTATCACCGTGACATAAAGGCTACCAACATACTTTTGGATTCAAAAATGAAAGCAAAAGTGTCAGATTTTGGGTTGGCGAAGCAAGGGAATGATGGCCAGTCTCATCTCACAACAAGAGTTGCTGGCACATACGGTTATTTGGCACCAGAGTATGCTCTTTATGGGCAACTGACAGAGAAGAGTGATGTGTACAGTTTTGGCATTGTGATTCTTGAGATCATGAGTGGAAGAAAAGTGCTTGATACCATGAATTCATCGGTTGTTTTGATCACGGATTGGGCATGGACACTGGCAAAATCAGGGAACATGGAAGACATTTTTGACCAGTCAATAAAGGAAGAGGGACCAGAGAAGATCATGGAAAGGTTTGTTCTTGTGGGAATACTCTGTGCTCATGCGATGGTGGCTTTAAGACCTACCATTGCCGAGGCCCTTAAGATGTTAGAGGGTGACATTGACATACCCCAGTTACCTGACAGACCAGTGCCACTGGGTCAGGAGGCCTTCCATTCTTCTTTGCAGCATGGTTTGCAAACTAGCGTAGGATCATCCTCCTATTTTTCTTCATATCTTGCATCCTATTCATCAAGCACTAGAACAACATAG 1851 0.4376 MDKQVVLLSLLIFFFTVSISGVSSTTCPMDLSYVETFPWDASSCRDPVVDKEHCCQALLSVIGMGLAEHLKNTSYFQLPDVNTSSICLSDFQTKVSALSINSSLVPYCFPRASEFVTNTSTCAGIITVDDWKSKVGMISPLDTSCNGDMSDQTRCSLCTDAGLKVTSHLNSLDPNGTKCFYFTVLYASAIVNQYGPTNLGTAGCILGLPLSVKGSSNKKQELKLVFGLVGAVTGVVLGFVLILVYRKWDKRRKEDKYHRSVENGVRNSVLPNTGAKWFRISELERATGKFSQRNMVGQGGDGVVYKGTLSDGTVVAVKEIFDLETKGDEDFCYEVEIISKIKHRNLLPLRGCCISSDNLKGKRRFLVYDFMPNGSLSYQLSVSGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVSDFGLAKQGNDGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTMNSSVVLITDWAWTLAKSGNMEDIFDQSIKEEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPQLPDRPVPLGQEAFHSSLQHGLQTSVGSSSYFSSYLASYSSSTRTT 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7265g00010 616 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 371 571 - -
Vium7265g00010 616 SMART serkin_6 290 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7265g00010 616 PANTHER OS01G0750732 PROTEIN 41 581 - -
Vium7265g00010 616 Gene3D Transferase(Phosphotransferase) domain 1 371 569 - -
Vium7265g00010 616 CDD STKc_IRAK 296 565 - -
Vium7265g00010 616 Pfam SPARK 23 179 IPR043891 -
Vium7265g00010 616 SUPERFAMILY Protein kinase-like (PK-like) 275 579 IPR011009 -
Vium7265g00010 616 ProSiteProfiles Protein kinase domain profile. 290 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7265g00010 616 Pfam Protein kinase domain 292 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7265g00010 616 FunFam Receptor-like serine/threonine-protein kinase At4g25390 255 370 - -
Vium7265g00010 616 Gene3D Phosphorylase Kinase; domain 1 251 370 - -
Vium7265g00010 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7265g00010 Vium-Chr7265 92288 94522 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7265g00010 16 585 Receptor kinase-like Gene Family AT1G11050 52.462 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vium7265g00010 Pkinase 5.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7265g00010 - - gmx:100820563 1003.05