Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7265g00009 ATGGAAAACCACGTCACGTTTCTCCTTCTCTTCCTCTTCATCACCATTCTCTTACCAGCTGCTGCTCCTTCATCTTGTCCAATCAACTTCACCTACGTTCAAACCTTCCCTTGGAACACTTCAACTTGCACAAACACAACCAACAAACAACCTTGTTGCTCAACCCTCAAAACCATCTTCCACATAGGCCTCTCCCAACATCTCAAACAAACATCGTTTTTTCAACTTCCCAATGAAAACACTTCCTCCGTTTGCTTATCAGATTTCCAAGAAAAACTCACAACCTTGTCAATTCACCCATCTCTGGTCCCTTCTTGCTTCCCTAACCCCTCTCAGTTCGTCACAAACTCTTCCACATGTGCAGGTGTGGTGACTTCTCGAGATTGGGAACAGAAGGTGAACTCGGTTAGACTTATCCCGATGCAAACTTTATGCAAAGACCTTGATGACCAAACTAGCTGCAACAATTGCATAGCAGCAAGCTTGAAAGTGGCTCTTCAGCTTACTATTGATAACCCAAATGCCACTGAGACGGGTTGCTTTTCGTTTGCATCGCTGTATGCTGCAGCGGTTGTTAATCCAGAAGGCACAACTGATGTCACCACGATCGGTTGCATAATGGGTGTGCAACTTTCTAGTGAAGTGGCAAAAGGGTCATCAAATAAGAGAGGAAAAGTTCTGAAGGTGGTTTTTACGTTATTGGGTGCTGTTGTTGGGGTTATTATTGTTTTTGTGCTGATGGTGGTTATGTACAGGAAGTGGGAAAAGAGAAGGAAGGAAAATGCTTATCACAGGGAAATTGAAAACGGTATCAGGAACAGTGTTTTGACGAACACTGGTGCAAAATGGTTTCACATATCGGAGCTTGAACGTGCCACCAACAGATTTTCGAGGAGGAATAAGGTTGGTCAAGGTGGTGATGGGGTTGTGTACAAAGGGAAGCTTGCAGATGGCACTTTGATCGCTGTTAAGGAGAATTTGAATTTGCAAAGTAAAGGGGATGAAGAGTTCTGCTATGAGGTGGATATCATAAGCAAAATAAAGCACAGGAACCTTCTTGCTCTTCGTGGTTGTTGCATTTCAAGTGATAATTTCATAGGTAAGAGAAGGTTTCTGGTTTATGATTTCATGCCAAATGGCAACCTCAGTTACCAACTGTCACTTGGTGGATTAACATGGCCACAAAGGAAGAACGTGATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAGCCACCAGTTTATCATCGTGATATAAAGGCTACAAACATACTTTTGGACTCCAAAATGAATGCTAAATTGGCAGATTTTGGGTTGGCCATGCAAGGTAGTGAGGACCAGTCTCCTCTCACCACAAGGGTTGCTGGCACGTATGGTTATGTGGCACCCGAGTATGCTTTATATGGGAAACTCACTGAGAAGAGTGATGTGTACAGTTTTGGTATTGTGATTCTGGAAATCATGAGTGGAAGAAAAGTGCTTGATACTTTGAATTCATCTGCAGATGCAATCACAGATTGGGTGTGGACACTAGCAGAATCGGGAAAGATGATGGAAATTTTTGATGAGTCAATAAGAGAAGGGCCAGGGAAAATTATGCAAAGGTTTGTTCATGTGGGAATGCTCTGTGCTCATGCAATGGCTGCTTTGAGACCTACCATTGCTGAGGCTCTTAAGATGTTAGAGGGTGACACTGACGTTCCTAAATTACCAGATAGGCCTGTGCCTTTGGGTCATGCGTCCTTTCAATCTTCTCTGTTGCATGGTTTGCAAGGAAGCGGAAGATCTATGCAACAAGTTTCATCCTATTCATGA 1827 0.433 MENHVTFLLLFLFITILLPAAAPSSCPINFTYVQTFPWNTSTCTNTTNKQPCCSTLKTIFHIGLSQHLKQTSFFQLPNENTSSVCLSDFQEKLTTLSIHPSLVPSCFPNPSQFVTNSSTCAGVVTSRDWEQKVNSVRLIPMQTLCKDLDDQTSCNNCIAASLKVALQLTIDNPNATETGCFSFASLYAAAVVNPEGTTDVTTIGCIMGVQLSSEVAKGSSNKRGKVLKVVFTLLGAVVGVIIVFVLMVVMYRKWEKRRKENAYHREIENGIRNSVLTNTGAKWFHISELERATNRFSRRNKVGQGGDGVVYKGKLADGTLIAVKENLNLQSKGDEEFCYEVDIISKIKHRNLLALRGCCISSDNFIGKRRFLVYDFMPNGNLSYQLSLGGLTWPQRKNVILDVAKGLAYLHYEIKPPVYHRDIKATNILLDSKMNAKLADFGLAMQGSEDQSPLTTRVAGTYGYVAPEYALYGKLTEKSDVYSFGIVILEIMSGRKVLDTLNSSADAITDWVWTLAESGKMMEIFDESIREGPGKIMQRFVHVGMLCAHAMAALRPTIAEALKMLEGDTDVPKLPDRPVPLGHASFQSSLLHGLQGSGRSMQQVSSYS 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7265g00009 608 SMART serkin_6 296 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7265g00009 608 Gene3D Phosphorylase Kinase; domain 1 256 376 - -
Vium7265g00009 608 Gene3D Transferase(Phosphotransferase) domain 1 377 573 - -
Vium7265g00009 608 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 78 584 - -
Vium7265g00009 608 FunFam Receptor-like serine/threonine-protein kinase At4g25390 261 376 - -
Vium7265g00009 608 SUPERFAMILY Protein kinase-like (PK-like) 275 566 IPR011009 -
Vium7265g00009 608 ProSiteProfiles Protein kinase domain profile. 296 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7265g00009 608 Pfam Protein kinase domain 297 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7265g00009 608 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 377 573 - -
Vium7265g00009 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Vium7265g00009 608 Pfam SPARK 22 176 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7265g00009 Vium-Chr7265 79469 81410 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7265g00009 20 595 Receptor kinase-like Gene Family AT1G11050 47.446 1.49e-179 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vium7265g00009 Pkinase 6.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7265g00009 - - gmx:100798901 947.577