Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7265g00007 ATGGATAAGCAAGTGAGGCTATTCCTTCTTCATTTGATATCCCTCTTGACCGTGTTCACACAAGGAGCTGCATCTTCCAGATGCCCCATGGATCTCTCCTACGTTGCTTCCATTCCCTGGAACACCTCAATATGCAGAGGCCATATTGACACGGATCGCTGTTGCGACACGCTAAGGAGTGTCTTTGCCATTGGCCTCGCTGAGCTCCTCAAAGATACTCACAGATTTTACCTTCCTAATGCAAACACTTCCTCCGCTTGCTTACATGACTTCGCAGGCAGGCTTTCAGCCTTGTCCGTCAGCCAAAACATGGTCCGTCTTTGCTTCCCCAACCCATCACGCTTTGTTTTCAACTCTTCGGCTTGTGGGGGTATCAGAAACACGGAAGATTGGAACATTTCGGTGGACCGGAATACCCCTTTGTACTCAACTTGCAATGGGGACCTCAAAGACAAAACTCGCTGCAGAGTTTGCTCTGATGCTGCTCACACACTCACAGAGAAGCTCACAGCTATTCACCCTAATGCTGACGCCAAAAGGTGTTTTTACTACATTGCGCTGTACGCTGCAGCTCTTGTTAACCCGTTTGGTACAACCGATATAAGCACCACTTCTTGCATACTTTGCCTGGAGCATGATGTGGTGGTACACGGGTCAAGTCATGGAGTAGAACTGTGGAAGCTGGGTTTTGCGTTGTTGGGTGTTGTTATTGGTGTTGTTCTTGCTTTTGTGATGATTTTTGTGTACAGGAAGTGGGATAAGAGAAAGAGGCAGAGTGTTTATCACAGGGAGATTGAGAACAAGGTCAGGGCATGTGTTTTGCCTAATGTTGGGGCAAAATGGTTTCGTGTAGACGAGCTTGAGCGTGCAACTGAGAGATTTTCGCGGAAGAATGTGGTTGGTCAAGGTGGTGATGGAGTTGTGTATAAAGGTACTCTTTCTGATGGTGCCGTGGTTGCTGTTAAGGAGATTTATTATTTGGAGGGTAAAGGGGATGAACAGTTCTGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTCCTCTTCGGGGCTGTTGCATTTCAAGTGGTGATTTGGAAGGTAAGAGAAGGTTTTTGATTTACGATTTTATGCCTAATGGAAGCCTCAGCGACCAAATGTGTTATGATGCTGCTAATAGGCTTACATGGCCACAAAGGAAGAAGATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTATGAAATCAAACCCCCAATTTATCATCGTGACATAAAGCCTACCAACATACTTTTGGACTCCAAAATGAATGCTAAATTGGCAGATTTTGGGTTGGCCAAGCAAGGCTCTGAGGATGAGTCTCATCTCACCACAAGGGTTGCTGGCACATATGGTTATGTAGCACCAGAGTATGCTCTCTATGGGCAACTAACTGATAAAAGTGATGTCTATAGTTTCGGTATTGTTATTCTTGAAATCATGAGTGGAAGGAAGGTGCTTGATGTTTTGGATTCATCTGCTGGTTTAATTACAGATTGGGTATGGACAATGACAGAATCTGGAAAGATGGAGGAAGTTTTTGATCAGTCAATAAGAGAAGGGCAAGAAAAAATCATGGAAAGGTTTGTTCTTGTTGGAATGCTATGTTCTCACTTGGCAGTGGCATTAAGGCCTACTATTGTTGATGCCCTTAAGATGTTAGAAGGAGTCATTGACATTCCCCAATTACCTGAGAGGCCAATGCCACTGGGTCATGAGTCCTTCCAATCTTCTTTGTTGAATGGTTTACAGAGTAGTGGTTGA 1800 0.4444 MDKQVRLFLLHLISLLTVFTQGAASSRCPMDLSYVASIPWNTSICRGHIDTDRCCDTLRSVFAIGLAELLKDTHRFYLPNANTSSACLHDFAGRLSALSVSQNMVRLCFPNPSRFVFNSSACGGIRNTEDWNISVDRNTPLYSTCNGDLKDKTRCRVCSDAAHTLTEKLTAIHPNADAKRCFYYIALYAAALVNPFGTTDISTTSCILCLEHDVVVHGSSHGVELWKLGFALLGVVIGVVLAFVMIFVYRKWDKRKRQSVYHREIENKVRACVLPNVGAKWFRVDELERATERFSRKNVVGQGGDGVVYKGTLSDGAVVAVKEIYYLEGKGDEQFCYEVEIISKIKHRNLLPLRGCCISSGDLEGKRRFLIYDFMPNGSLSDQMCYDAANRLTWPQRKKIILDVAKGLAYLHYEIKPPIYHRDIKPTNILLDSKMNAKLADFGLAKQGSEDESHLTTRVAGTYGYVAPEYALYGQLTDKSDVYSFGIVILEIMSGRKVLDVLDSSAGLITDWVWTMTESGKMEEVFDQSIREGQEKIMERFVLVGMLCSHLAVALRPTIVDALKMLEGVIDIPQLPERPMPLGHESFQSSLLNGLQSSG 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7265g00007 599 Pfam SPARK 24 181 IPR043891 -
Vium7265g00007 599 Pfam Protein kinase domain 295 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7265g00007 599 SMART serkin_6 294 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7265g00007 599 SUPERFAMILY Protein kinase-like (PK-like) 276 567 IPR011009 -
Vium7265g00007 599 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 375 574 - -
Vium7265g00007 599 ProSiteProfiles Protein kinase domain profile. 294 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7265g00007 599 Gene3D Phosphorylase Kinase; domain 1 254 374 - -
Vium7265g00007 599 FunFam Receptor-like serine/threonine-protein kinase At4g25390 259 374 - -
Vium7265g00007 599 Gene3D Transferase(Phosphotransferase) domain 1 375 574 - -
Vium7265g00007 599 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 105 580 - -
Vium7265g00007 599 CDD STKc_IRAK 309 568 - -
Vium7265g00007 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7265g00007 Vium-Chr7265 47868 50058 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7265g00007 23 596 Receptor kinase-like Gene Family AT1G11050 47.342 1.83e-178 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vium7265g00007 Pkinase 9.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7265g00007 - - gmx:100800481 848.58