Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7265g00005 ATGAAAAATCGTTTTTCTCCGGCTACTTGCGCACACCAAATGTCGACGAAAAATCGTCGCTCGTCGTTTTCCTCCTCAACGGCGTCGTCTTTGGCCAAACGACATTCATCCGTCGTGTCGTCGGGGAAAGCTGCGAAGAGAGCGCCGCTCGCCAACATCACAAACGAGAGGAATGCGCCTTCCTCATCTTCGGTGTCAAGTTCAATTAAAACTGCCAAGACCAAGAAAGAGGATCCCGCAAGAAGCAGTAGCATCACAAGATCAACAACTTGTGGGAACAAATTACGTGAGTTAAAGACTAACTCAGGCACAACTATCATTCCAAAGGCTAATTCCTTACCACAAACGAAGGATGCTGCTCCTGCAGTTGCCAGAGTCTCTGTGTCCGTTCAGAGCAGCATTGGTGTTTCTCCTAGTAAATCAGATGCGAGGTCCGTTTCTATGGATGAAACGTTGTCTTCTTATTCTATCAAGAGTCCTGATGAAGTTGAATATCTGGACAACAGGGATGTCTCAGCTGTTGGTTCAATTCAGAGAAAGACAAGCAATTTAAGCATTTGTGATACCACCAAGCCAGAAGGTAACATATATAGTGGGGAAATAGTTGTTGATTTAAAAAGAGAGGGCAAGGTTGTCAATATTGATAACATTTGCTCGGATCCGCAGCTTTGTGCAACCTATGCTTGTGATATCTACAAGCACCTACGTGAATCTGAGGAAAAGAAAAGGCCTTCCATAGACTTCATGGAGAGAATTCAGAATGACATAAATGTTAGCATGCGTGCAATATTGATTGACTGGCTTGTTGAGGTGGCTGAGGAGTATCGCCTTGTGCCTGATACATTGTATTTGACAGTGAACTATATTGATCGGTATCTTTCAGGGAATGCCATGAATAGGCAAAGATTACAATTACTTGGTGTTTCCTGCATGATGATTGCCTCTAAATACGAGGAGATTTGTGCACCAGAGGTGGAGGATTTTTGTTATATAACTGATAATACGTACTTAAAAGAAGAGCTTTTACGAATGGAATCTGCTGTTTTGAATTATCTTAAGTTCGAAATGACAGCCCCAACAGTTAAATGTTTCTTAAGACGATTTGTTCGTGCAGCTGCTCATGATGTCCAAGAGCTACCTTCACTTCAACTGGAGTGCCTAACCAACTTTATTGCCGAATTGTCTCTCTTGGAGTACAATATGCTGCGTTATCCTCCATCACTGATAGCTGCTTCGGCAACTTTCCTTGGCAGATTTATACTTTTCCCTTCAAAGAAACCATGGAATTCCATATTGCAACATTACACACAATACTGGCCTTCTGATTTGTGTGCTTGTGTGAAAGATCTCCATCGCCTTTGTTGCAGTAGCGATACTTCTAATTTACCTGCCATCCGAGAGAAATACAGTCAGCACAAGTACAAATATGTGGCCAAGAAATGCATCCCTGTTTCAATACCGCAAGAAGTTTTCCAGAATTGA 1482 0.4244 MKNRFSPATCAHQMSTKNRRSSFSSSTASSLAKRHSSVVSSGKAAKRAPLANITNERNAPSSSSVSSSIKTAKTKKEDPARSSSITRSTTCGNKLRELKTNSGTTIIPKANSLPQTKDAAPAVARVSVSVQSSIGVSPSKSDARSVSMDETLSSYSIKSPDEVEYLDNRDVSAVGSIQRKTSNLSICDTTKPEGNIYSGEIVVDLKREGKVVNIDNICSDPQLCATYACDIYKHLRESEEKKRPSIDFMERIQNDINVSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMNRQRLQLLGVSCMMIASKYEEICAPEVEDFCYITDNTYLKEELLRMESAVLNYLKFEMTAPTVKCFLRRFVRAAAHDVQELPSLQLECLTNFIAELSLLEYNMLRYPPSLIAASATFLGRFILFPSKKPWNSILQHYTQYWPSDLCACVKDLHRLCCSSDTSNLPAIREKYSQHKYKYVAKKCIPVSIPQEVFQN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7265g00005 493 MobiDBLite consensus disorder prediction 1 37 - -
Vium7265g00005 493 MobiDBLite consensus disorder prediction 1 111 - -
Vium7265g00005 493 Pfam Cyclin, N-terminal domain 230 356 IPR006671 -
Vium7265g00005 493 SMART cyclin_7 363 452 IPR013763 -
Vium7265g00005 493 SMART cyclin_7 266 350 IPR013763 -
Vium7265g00005 493 SUPERFAMILY Cyclin-like 359 482 IPR036915 -
Vium7265g00005 493 CDD CYCLIN_AtCycA_like_rpt1 220 355 - -
Vium7265g00005 493 FunFam Mitotic cyclin 6 244 344 - -
Vium7265g00005 493 Pfam Cyclin, C-terminal domain 359 480 IPR004367 -
Vium7265g00005 493 MobiDBLite consensus disorder prediction 54 70 - -
Vium7265g00005 493 PANTHER CYCLINS 145 471 IPR039361 -
Vium7265g00005 493 FunFam Cyclin A1 346 479 - -
Vium7265g00005 493 Gene3D - 244 357 - -
Vium7265g00005 493 ProSitePatterns Cyclins signature. 261 292 IPR006671 -
Vium7265g00005 493 CDD CYCLIN_AtCycA-like_rpt2 359 474 - -
Vium7265g00005 493 PIRSF Cyclin_A_B_D_E 8 489 IPR046965 GO:0016538|GO:0044772
Vium7265g00005 493 Gene3D - 230 479 - -
Vium7265g00005 493 MobiDBLite consensus disorder prediction 83 111 - -
Vium7265g00005 493 SMART Cyclin_C_2 359 483 IPR004367 -
Vium7265g00005 493 SUPERFAMILY Cyclin-like 219 356 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7265g00005 Vium-Chr7265 16608 20795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7265g00005 17 493 Core Cell Cycle Gene Families AT1G44110 58.248 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7265g00005 K06627 - gmx:100776207 694.886