Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7265g00004 ATGAAAAATCGTTTTTCTCCGGCTACTTGCGCACACCAAATGTCGACGAAAAATCGTCGCTCGTCGTTTTCCTCCTCAACGGCGTCGTCTTTGGCCAAACGACATTCATCCGTCGTGTCGTCGGGGAAAGCTGCGAAGAGAGCGCCGCTCGCCAACATCACAAACGAGAGGAATGCGCCTTCCTCATCTTCGGTGTCAAGTTCAATTAAAACTGCCAAGACCAAGAAAGAGGATCCCGCAAGAAGCAGTAGCATCACAAGATCAACAACTTGTGGGAACAAATTACGTGAGTTAAAGACTAACTCAGGCACAACTATCATTCCAAAGGCTAATTCCTTACCACAAACGAAGGATGCTGCTCCTGCAGTTGCCAGAGTCTCTGTGTCCGTTCAGAGCAGCATTGGTGTTTCTCCTAGTAAATCAGATGCGAGGGATGTCTCAGCTGTTGGTTCAATTCAGAGAAAGACAAGCAATTTAAGCATTTGTGATACCACCAAGCCAGAAGGTAACATATATAGTGGGGAAATAGTTGTTGATTTAAAAAGAGAGGGCAAGGTTGTCAATATTGATAACATTTGCTCGGATCCGCAGCTTTGTGCAACCTATGCTTGTGATATCTACAAGCACCTACGTGAATCTGAGGAAAAGAAAAGGCCTTCCATAGACTTCATGGAGAGAATTCAGAATGACATAAATGTTAGCATGCGTGCAATATTGATTGACTGGCTTGTTGAGGTGGCTGAGGAGTATCGCCTTGTGCCTGATACATTGTATTTGACAGTGAACTATATTGATCGGTATCTTTCAGGGAATGCCATGAATAGGCAAAGATTACAATTACTTGGTGTTTCCTGCATGATGATTGCCTCTAAATACGAGGAGATTTGTGCACCAGAGGTGGAGGATTTTTGTTATATAACTGATAATACGTACTTAAAAGAAGAGCTTTTACGAATGGAATCTGCTGTTTTGAATTATCTTAAGTTCGAAATGACAGCCCCAACAGTTAAATGTTTCTTAAGACGATTTGTTCGTGCAGCTGCTCATGATGTCCAAGAGCTACCTTCACTTCAACTGGAGTGCCTAACCAACTTTATTGCCGAATTGTCTCTCTTGGAGTACAATATGCTGCGTTATCCTCCATCACTGATAGCTGCTTCGGCAACTTTCCTTGGCAGATTTATACTTTTCCCTTCAAAGAAACCATGGAATTCCATATTGCAACATTACACACAATACTGGCCTTCTGATTTGTGTGCTTGTGTGAAAGATCTCCATCGCCTTTGTTGCAGTAGCGATACTTCTAATTTACCTGCCATCCGAGAGAAATACAGTCAGCACAAGTACAAATATGTGGCCAAGAAATGCATCCCTGTTTCAATACCGCAAGAAGTTTTCCAGAATTGA 1407 0.4264 MKNRFSPATCAHQMSTKNRRSSFSSSTASSLAKRHSSVVSSGKAAKRAPLANITNERNAPSSSSVSSSIKTAKTKKEDPARSSSITRSTTCGNKLRELKTNSGTTIIPKANSLPQTKDAAPAVARVSVSVQSSIGVSPSKSDARDVSAVGSIQRKTSNLSICDTTKPEGNIYSGEIVVDLKREGKVVNIDNICSDPQLCATYACDIYKHLRESEEKKRPSIDFMERIQNDINVSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMNRQRLQLLGVSCMMIASKYEEICAPEVEDFCYITDNTYLKEELLRMESAVLNYLKFEMTAPTVKCFLRRFVRAAAHDVQELPSLQLECLTNFIAELSLLEYNMLRYPPSLIAASATFLGRFILFPSKKPWNSILQHYTQYWPSDLCACVKDLHRLCCSSDTSNLPAIREKYSQHKYKYVAKKCIPVSIPQEVFQN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7265g00004 468 Gene3D - 205 454 - -
Vium7265g00004 468 MobiDBLite consensus disorder prediction 1 37 - -
Vium7265g00004 468 Gene3D - 219 332 - -
Vium7265g00004 468 PANTHER CYCLINS 118 446 IPR039361 -
Vium7265g00004 468 Pfam Cyclin, C-terminal domain 334 455 IPR004367 -
Vium7265g00004 468 PIRSF Cyclin_A_B_D_E 8 464 IPR046965 GO:0016538|GO:0044772
Vium7265g00004 468 SMART cyclin_7 241 325 IPR013763 -
Vium7265g00004 468 SMART cyclin_7 338 427 IPR013763 -
Vium7265g00004 468 MobiDBLite consensus disorder prediction 54 70 - -
Vium7265g00004 468 CDD CYCLIN_AtCycA-like_rpt2 334 449 - -
Vium7265g00004 468 CDD CYCLIN_AtCycA_like_rpt1 195 330 - -
Vium7265g00004 468 Pfam Cyclin, N-terminal domain 205 331 IPR006671 -
Vium7265g00004 468 SMART Cyclin_C_2 334 458 IPR004367 -
Vium7265g00004 468 FunFam Cyclin A1 321 454 - -
Vium7265g00004 468 MobiDBLite consensus disorder prediction 1 92 - -
Vium7265g00004 468 FunFam Mitotic cyclin 6 219 319 - -
Vium7265g00004 468 SUPERFAMILY Cyclin-like 334 457 IPR036915 -
Vium7265g00004 468 ProSitePatterns Cyclins signature. 236 267 IPR006671 -
Vium7265g00004 468 SUPERFAMILY Cyclin-like 194 331 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7265g00004 Vium-Chr7265 16607 20795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7265g00004 17 468 Core Cell Cycle Gene Families AT1G44110 57.602 1.12e-172 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7265g00004 K06627 - gmx:100776207 645.195