Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium725g00009 ATGTCAGCATCCTTCAGCTACGATGTGTTCCTCAGCTTCAGAGGTTCTGATACTCGCTACGGTTTCACTGGAAATCTCTACAAAGCTCTTTGTGACAAGGGAATCCATGCCTTCATTGATGATGAAGAGCTTCAAAGAGGGGATGAAATCGGAGAAGCACTTATCGAGGCCATTAAACAGTCTAGGATGGCCATAGTTGTGTTCTCCAAGAACTATGCATCTTCTTCCTTTTGCTTAGATGAACTTGTCAAGATCATTGACTGTGTTAAGGAAAAGGGTCGTCTGATTTTGCCCATTTTCTACGACGTCCGCCCTTCTCATGTTCGAGGCCAGTCTGGGAGTTATGCAGAAGCTTTGGCCATGCACCAGGAAAGGTTCAAAAGCAGCAATCAAAGCCTCAGTGATAACATGGGCAGGTTGCAGAAATGGAAGATGGCTCTTAACCAAGCAGCTAATGTGTCCGGAAAGCATTACAAACTTGGAAATGAATATGAACATGAGTTTATAGGGAAGATAGTTAAAGAGGTCTGCAACAAGATAAACCGAAGACCTTTGCATGTTGCAGATTACCCCGTTGGGATGGAGTGTCGAGTGCAAAAAGTGAAGTCACTTCTTCAATTTGGATCTGATACTGGAGTCCGCATTGTAGGGATTCATGGAATAGGCGGAATGGGGAAGACAACACTAGCTCGAGCAGTTTACAATTCCATTGCAGACCAATTTGAAGGTTTATGTTTTCTTGATGGTGTGAGAGAAAACGCTGTTAAACAAGGGTTAGTACATCTCCAAGAGATGCTTCTTTCTGAAATAGTTGGAGAGAAGGATATTAGGATAGGAAGTGTAAGCAAAGGAATTTCAATAATAAAGCATAGGCTCCACCGAAAGAAGGTTCTTTTGATTCTTGACGATGTTGACAAACTAGAACAAGTGCGAGCAACTGCTGGAGAGCGTAATTGGTTTGGTTCTGGAAGCAGAGTCATCATAACAACTAGGGACAAACATTTGCTTCAGGGAGTTGATGGAAAATATGAGGTAGAGGACTTAAATGAGGAAGAAGCACTTGAGTTGCTTAGTTGGAATGCTTTTAAAGATCACAGAGTTGATCCATGTTACAAGGACATTTCAAACCAAGCAGTGGCTTATGCTTCTGGCCTTCCACTAGCTTTGGAAGTAATAGGTTCCTTGTTGTTTGGAAAAGGTACAAGAGAATGGGAATCTGCATTAGACCAGTTCAAAAAAATCCCTAACAGAAGGATCCAAGAAATACTTAAGGTGAGCTATAATGCTTTAGAGGAAAATCAACAGAGAATTTTTCTTGACATTGCTTGCTGCTTGAAAGGATATGAATTGGAAGAGGTTGAAGACATACTTGGTGTTCATTATGGTGTTTGCATGAAATATGACATAGGAGTGTTGGTGGATAAATCTCTCATAAAAATTAAGAATGGCTGTGTGACACTTCATGAATTGATAGAAGTTATGGGTAAGGAAATCGATCGCCAAGAATCACCCAAAGAGCTTGGGAAACACAGGAGGTTATGGTTCCATAAAGATATAATTCAAGTTTTAGCAGAAAATACAGGGACTAGTGAGATTGAAATAATATGTTTGGATTTCCCCTTATTTGAAGAAGATGAAGAAGTATTTGTAGAATGGGATGGAGAGGCCTTCAAGAAGATGGAAAACCTCAAAACACTAATTATTAGAAACTCTCATTTTTCAAAAGGTCCAGCATATCTTCCAAATAGTTTAAGAGTATTAGAATGGTGGACATATCCATTACAGGATTTACCAACTGATTTTCATCCGAGCAAACTTGCCATATGCAAATTACCCAGAAGTTGCTTTACATCACTTGAGTTAGCTACCATATCAAAGAAGTTCATGAATCTGACGGTTCTGAATTTTGATGGTACTGAATGTTTGACAAAAATACCTGACATATCCAGCCTCCAAAATTTAGAAAAACTGACATTTGAGTGTTGTGAGAATTTAGTAGCTATTCATGGTTCTGTGGGTTTTCTTGATAAACTTAAAATCTTGAGTGCTTTTGGCTGCAGCAAGCTTACGAGTTTTCCACCCATCAAGTTGATCTCTCTTGAACAACTAGATATTTCATCTTGTTCAAGTCTTGAGAGTTTTCCAGAAATATTAGGAAAGATGGAAAATATAACGCAGCTAGAGTTGAAGTACACTCCCTTAAAAGAATTCCCATTTTCATTTAGAAATCTTGCTCGACTTCAAGATTTGGTGCTGGTTGACTGCGGAAATGTTCAGTTGCCGAGTAGCATTGTCATGTTGCCAGAACTGGCTGAGATTTTCGCCCTGGGGTGTAAAGGCTGGCTATTGCCAAAACAAGATGAGAATGATGAAGAAAAAGTAAGCTTAGTGTCTTCAAATGTAAAATGTCTTTGTCTCTCGGGCTGCAATCTATCAGATGAATACTTTCCCATGGTTTTAGCATGGTTTGGTAATGTGAAAGAGTTAGAACTATCAAGCAATAGCTTCACATTTCTTCCAGAATGCATCAAGCAATGTCGCTCTTTAAAATTACTTAACTTGGATAACTGTGAGCATCTTCGAGAAATTAGAGGGACTCCACCAAATTTAGAATATTTCTCTGCTGGAAATTGCAAATCCTTGAGTTTCTGTTGTTCAGCCATGCTATTGGACCAGGAACTGCATGTGGCTGGAAACACTATGTTTTGTTTGCCAGGATCTAGAATACCAGAATGGCTAGAGCAACAAAGTATAGGTCCATCACTATCTTTCTGGTTTCGTGAGAAGTTCCCTGTCATGGATCTGTGTTTTGTTATTGGGCCAATGGGTAAGGACTCTATTTTGTTTAGACCAATCATGACCATCAATGGCAACACAATGGAGATACAGTCCTTAACTGATAAGAGGTTTTGTTTCGATTTCCCTGCATTGGATTATCATATACTCATCATTGGTACAAAGTACATGAAGTTTGGAGATAATCTGGATAAACCACTCTCAAAAAATGAATGGAATCATGTGGTGGTTTCCATTGCTCTTGATTTTGAACCAACCCCTAAAGAGATTATTGTCAAGCAAACTGCACTCCATGTAATCAAACCAGAAAGTAGCATGGATGATATCCAATTCACTGATCCTTGTAAGCAACCATCCTTCAAAGAGAAGCAAAGATTGGTTGACACTATGCAGCACCAAACCACTTTGGTTTCATTGGAACCACATGTGAGACAAGGCAGAAATTCACTTTCATTGATTCCACCTCAAGCATGCAAAAATAATCTGAACTGGGATTCATTTTCAACTGGAACAAGTAGCATTGCCAGTGTCCAGGAATATGAAATTGCATCAAAGAAGTTACGTTTGGACATGGGAATTTTGCAATTTGTGCAGCAGCGGAAAAGATTGGCTATTTTGGGTTTACTGCAACAACGACGCATGGCTTCATTGGATTTACTGCAACGAAGGGGCAGAGAATTGCTTTCATTGCTTTGTTCTCCATCATTGGAGTTGATGGTCTCATGGCAGAGGAGATGCATCACAACTTTCCAAGGTTTGCAGGAGCAACATTTACCTTCGACCATCAAACAAAACTTTGAAGGCTGTAATGGCATCAATGAAGCCAAAGTGAATGAAGTGATAAGATGCAACAACAATTATGGAAATGACAATGAAAGAAACCCATTAGTGGAACAGCTTCTACTGAGAAAGGTTAGTGTATGA 3720 0.3952 MSASFSYDVFLSFRGSDTRYGFTGNLYKALCDKGIHAFIDDEELQRGDEIGEALIEAIKQSRMAIVVFSKNYASSSFCLDELVKIIDCVKEKGRLILPIFYDVRPSHVRGQSGSYAEALAMHQERFKSSNQSLSDNMGRLQKWKMALNQAANVSGKHYKLGNEYEHEFIGKIVKEVCNKINRRPLHVADYPVGMECRVQKVKSLLQFGSDTGVRIVGIHGIGGMGKTTLARAVYNSIADQFEGLCFLDGVRENAVKQGLVHLQEMLLSEIVGEKDIRIGSVSKGISIIKHRLHRKKVLLILDDVDKLEQVRATAGERNWFGSGSRVIITTRDKHLLQGVDGKYEVEDLNEEEALELLSWNAFKDHRVDPCYKDISNQAVAYASGLPLALEVIGSLLFGKGTREWESALDQFKKIPNRRIQEILKVSYNALEENQQRIFLDIACCLKGYELEEVEDILGVHYGVCMKYDIGVLVDKSLIKIKNGCVTLHELIEVMGKEIDRQESPKELGKHRRLWFHKDIIQVLAENTGTSEIEIICLDFPLFEEDEEVFVEWDGEAFKKMENLKTLIIRNSHFSKGPAYLPNSLRVLEWWTYPLQDLPTDFHPSKLAICKLPRSCFTSLELATISKKFMNLTVLNFDGTECLTKIPDISSLQNLEKLTFECCENLVAIHGSVGFLDKLKILSAFGCSKLTSFPPIKLISLEQLDISSCSSLESFPEILGKMENITQLELKYTPLKEFPFSFRNLARLQDLVLVDCGNVQLPSSIVMLPELAEIFALGCKGWLLPKQDENDEEKVSLVSSNVKCLCLSGCNLSDEYFPMVLAWFGNVKELELSSNSFTFLPECIKQCRSLKLLNLDNCEHLREIRGTPPNLEYFSAGNCKSLSFCCSAMLLDQELHVAGNTMFCLPGSRIPEWLEQQSIGPSLSFWFREKFPVMDLCFVIGPMGKDSILFRPIMTINGNTMEIQSLTDKRFCFDFPALDYHILIIGTKYMKFGDNLDKPLSKNEWNHVVVSIALDFEPTPKEIIVKQTALHVIKPESSMDDIQFTDPCKQPSFKEKQRLVDTMQHQTTLVSLEPHVRQGRNSLSLIPPQACKNNLNWDSFSTGTSSIASVQEYEIASKKLRLDMGILQFVQQRKRLAILGLLQQRRMASLDLLQRRGRELLSLLCSPSLELMVSWQRRCITTFQGLQEQHLPSTIKQNFEGCNGINEAKVNEVIRCNNNYGNDNERNPLVEQLLLRKVSV 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium725g00009 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 441 IPR027417 -
Vium725g00009 1239 SUPERFAMILY "Winged helix" DNA-binding domain 418 523 IPR036390 -
Vium725g00009 1239 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 759 IPR044974 GO:0006952
Vium725g00009 1239 Gene3D Ribonuclease Inhibitor 788 911 IPR032675 -
Vium725g00009 1239 ProSiteProfiles TIR domain profile. 5 180 IPR000157 GO:0007165
Vium725g00009 1239 Pfam NB-ARC domain 197 433 IPR002182 GO:0043531
Vium725g00009 1239 Gene3D Ribonuclease Inhibitor 546 787 IPR032675 -
Vium725g00009 1239 Gene3D - 347 431 IPR042197 -
Vium725g00009 1239 SMART till_3 6 153 IPR000157 GO:0007165
Vium725g00009 1239 Gene3D - 5 178 IPR035897 -
Vium725g00009 1239 SUPERFAMILY L domain-like 549 904 - -
Vium725g00009 1239 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 155 IPR035897 -
Vium725g00009 1239 Gene3D - 179 345 IPR027417 -
Vium725g00009 1239 PRINTS Disease resistance protein signature 215 230 - -
Vium725g00009 1239 PRINTS Disease resistance protein signature 291 305 - -
Vium725g00009 1239 PRINTS Disease resistance protein signature 382 396 - -
Vium725g00009 1239 PRINTS Disease resistance protein signature 695 711 - -
Vium725g00009 1239 FunFam Disease resistance protein (TIR-NBS-LRR class) 3 182 - -
Vium725g00009 1239 Pfam TIR domain 7 181 IPR000157 GO:0007165
Vium725g00009 1239 SMART AAA_5 212 349 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium725g00009 Vium-Chr725 25945 35244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium725g00009 1 778 WRKY Transcription Factor Family AT4G12020 31.683 3.17e-84 301