LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium725g00008	ATGTCAGCATCCTTCAGCTACGATGTGTTCCTCAGCTTCAGAGGTTCTGATACTCGCTACGGTTTCACTGGAAATCTCTACAAAGCTCTTTGTGACAAGGGAATCCATGCCTTCATTGATGATGAAGAGCTTCAAAGAGGGGATGAAATCGGAGAAGCACTTATCGAGGCCATTAAACAGTCTAGGATGGCCATAGTTGTGTTCTCCAAGAACTATGCATCTTCTTCCTTTTGCTTAGATGAACTTGTCAAGATCATTGACTGTGTTAAGGAAAAGGGTCGTCTGATTTTGCCCATTTTCTACGACGTCCGCCCTTCTCATGTTCGAGGCCAGTCTGGGAGTTATGCAGAAGCTTTGGCCATGCACCAGGAAAGGTTCAAAAGCAGCAATCAAAGCCTCAGTGATAACATGGGCAGGTTGCAGAAATGGAAGATGGCTCTTAACCAAGCAGCTAATGTGTCCGGAAAGCATTACAAACTTGGAAATGAATATGAACATGAGTTTATAGGGAAGATAGTTAAAGAGGTCTGCAACAAGATAAACCGAAGACCTTTGCATGTTGCAGATTACCCCGTTGGGATGGAGTGTCGAGTGCAAAAAGTGAAGTCACTTCTTCAATTTGGATCTGATACTGGAGTCCGCATTGTAGGGATTCATGGAATAGGCGGAATGGGGAAGACAACACTAGCTCGAGCAGTTTACAATTCCATTGCAGACCAATTTGAAGGTTTATGTTTTCTTGATGGTGTGAGAGAAAACGCTGTTAAACAAGGGTTAGTACATCTCCAAGAGATGCTTCTTTCTGAAATAGTTGGAGAGAAGGATATTAGGATAGGAAGTGTAAGCAAAGGAATTTCAATAATAAAGCATAGGCTCCACCGAAAGAAGGTTCTTTTGATTCTTGACGATGTTGACAAACTAGAACAAGTGCGAGCAACTGCTGGAGAGCGTAATTGGTTTGGTTCTGGAAGCAGAGTCATCATAACAACTAGGGACAAACATTTGCTTCAGGGAGTTGATGGAAAATATGAGGTAGAGGACTTAAATGAGGAAGAAGCACTTGAGTTGCTTAGTTGGAATGCTTTTAAAGATCACAGAGTTGATCCATGTTACAAGGACATTTCAAACCAAGCAGTGGCTTATGCTTCTGGCCTTCCACTAGCTTTGGAAGTAATAGGTTCCTTGTTGTTTGGAAAAGGTACAAGAGAATGGGAATCTGCATTAGACCAGTTCAAAAAAATCCCTAACAGAAGGATCCAAGAAATACTTAAGGTGAGCTATAATGCTTTAGAGGAAAATCAACAGAGAATTTTTCTTGACATTGCTTGCTGCTTGAAAGGATATGAATTGGAAGAGGTTGAAGACATACTTGGTGTTCATTATGGTGTTTGCATGAAATATGACATAGGAGTGTTGGTGGATAAATCTCTCATAAAAATTAAGAATGGCTGTGTGACACTTCATGAATTGATAGAAGTTATGGGTAAGGAAATCGATCGCCAAGAATCACCCAAAGAGCTTGGGAAACACAGGAGGTTATGGTTCCATAAAGATATAATTCAAGTTTTAGCAGAAAATACAGGGACTAGTGAGATTGAAATAATATGTTTGGATTTCCCCTTATTTGAAGAAGATGAAGAAGTATTTGTAGAATGGGATGGAGAGGCCTTCAAGAAGATGGAAAACCTCAAAACACTAATTATTAGAAACTCTCATTTTTCAAAAGGTCCAGCATATCTTCCAAATAGTTTAAGAGTATTAGAATGGTGGACATATCCATTACAGGATTTACCAACTGATTTTCATCCGAGCAAACTTGCCATATGCAAATTACCCAGAAGTTGCTTTACATCACTTGAGTTAGCTACCATATCAAAGAAGTTCATGAATCTGACGGTTCTGAATTTTGATGGTACTGAATGTTTGACAAAAATACCTGACATATCCAGCCTCCAAAATTTAGAAAAACTGACATTTGAGTGTTGTGAGAATTTAGTAGCTATTCATGGTTCTGTGGGTTTTCTTGATAAACTTAAAATCTTGAGTGCTTTTGGCTGCAGCAAGCTTACGAGTTTTCCACCCATCAAGTTGATCTCTCTTGAACAACTAGATATTTCATCTTGTTCAAGTCTTGAGAGTTTTCCAGAAATATTAGGAAAGATGGAAAATATAACGCAGCTAGAGTTGAAGTACACTCCCTTAAAAGAATTCCCATTTTCATTTAGAAATCTTGCTCGACTTCAAGATTTGGTGCTGGTTGACTGCGGAAATGTTCAGTTGCCGAGTAGCATTGTCATGTTGCCAGAACTGGCTGAGATTTTCGCCCTGGGGTGTAAAGGCTGGCTATTGCCAAAACAAGATGAGAATGATGAAGAAAAAGAACTGCATGTGGCTGGAAACACTATGTTTTGTTTGCCAGGATCTAGAATACCAGAATGGCTAGAGCAACAAAGTATAGGTCCATCACTATCTTTCTGGTTTCGTGAGAAGTTCCCTGTCATGGATCTGTGTTTTGTTATTGGGCCAATGGGTAAGGACTCTATTTTGTTTAGACCAATCATGACCATCAATGGCAACACAATGGAGATACAGTCCTTAACTGATAAGAGGTTTTGTTTCGATTTCCCTGCATTGGATTATCATATACTCATCATTGGTACAAAGTACATGAAGTTTGGAGATAATCTGGATAAACCACTCTCAAAAAATGAATGGAATCATGTGGTGGTTTCCATTGCTCTTGATTTTGAACCAACCCCTAAAGAGATTATTGTCAAGCAAACTGCACTCCATGTAATCAAACCAGAAAGTAGCATGGATGATATCCAATTCACTGATCCTTGTAAGCAACCATCCTTCAAAGAGAAGCAAAGATTGGTTGACACTATGCAGCACCAAACCACTTTGGTTTCATTGGAACCACATGTGAGACAAGGCAGAAATTCACTTTCATTGATTCCACCTCAAGCATGCAAAAATAATCTGAACTGGGATTCATTTTCAACTGGAACAAGTAGCATTGCCAGTGTCCAGGAATATGAAATTGCATCAAAGAAGTTACGTTTGGACATGGGAATTTTGCAATTTGTGCAGCAGCGGAAAAGATTGGCTATTTTGGGTTTACTGCAACAACGACGCATGGCTTCATTGGATTTACTGCAACGAAGGGGCAGAGAATTGCTTTCATTGCTTTGTTCTCCATCATTGGAGTTGATGGTCTCATGGCAGAGGAGATGCATCACAACTTTCCAAGGTTTGCAGGAGCAACATTTACCTTCGACCATCAAACAAAACTTTGAAGGCTGTAATGGCATCAATGAAGCCAAAGTGAATGAAGTGATAAGATGCAACAACAATTATGGAAATGACAATGAAAGAAACCCATTAGTGGAACAGCTTCTACTGAGAAAGGTTAGTGTATGA	3423	0.3967	MSASFSYDVFLSFRGSDTRYGFTGNLYKALCDKGIHAFIDDEELQRGDEIGEALIEAIKQSRMAIVVFSKNYASSSFCLDELVKIIDCVKEKGRLILPIFYDVRPSHVRGQSGSYAEALAMHQERFKSSNQSLSDNMGRLQKWKMALNQAANVSGKHYKLGNEYEHEFIGKIVKEVCNKINRRPLHVADYPVGMECRVQKVKSLLQFGSDTGVRIVGIHGIGGMGKTTLARAVYNSIADQFEGLCFLDGVRENAVKQGLVHLQEMLLSEIVGEKDIRIGSVSKGISIIKHRLHRKKVLLILDDVDKLEQVRATAGERNWFGSGSRVIITTRDKHLLQGVDGKYEVEDLNEEEALELLSWNAFKDHRVDPCYKDISNQAVAYASGLPLALEVIGSLLFGKGTREWESALDQFKKIPNRRIQEILKVSYNALEENQQRIFLDIACCLKGYELEEVEDILGVHYGVCMKYDIGVLVDKSLIKIKNGCVTLHELIEVMGKEIDRQESPKELGKHRRLWFHKDIIQVLAENTGTSEIEIICLDFPLFEEDEEVFVEWDGEAFKKMENLKTLIIRNSHFSKGPAYLPNSLRVLEWWTYPLQDLPTDFHPSKLAICKLPRSCFTSLELATISKKFMNLTVLNFDGTECLTKIPDISSLQNLEKLTFECCENLVAIHGSVGFLDKLKILSAFGCSKLTSFPPIKLISLEQLDISSCSSLESFPEILGKMENITQLELKYTPLKEFPFSFRNLARLQDLVLVDCGNVQLPSSIVMLPELAEIFALGCKGWLLPKQDENDEEKELHVAGNTMFCLPGSRIPEWLEQQSIGPSLSFWFREKFPVMDLCFVIGPMGKDSILFRPIMTINGNTMEIQSLTDKRFCFDFPALDYHILIIGTKYMKFGDNLDKPLSKNEWNHVVVSIALDFEPTPKEIIVKQTALHVIKPESSMDDIQFTDPCKQPSFKEKQRLVDTMQHQTTLVSLEPHVRQGRNSLSLIPPQACKNNLNWDSFSTGTSSIASVQEYEIASKKLRLDMGILQFVQQRKRLAILGLLQQRRMASLDLLQRRGRELLSLLCSPSLELMVSWQRRCITTFQGLQEQHLPSTIKQNFEGCNGINEAKVNEVIRCNNNYGNDNERNPLVEQLLLRKVSV	1140

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium725g00008	1140	SUPERFAMILY	"Winged helix" DNA-binding domain	418	523	IPR036390	-
	Vium725g00008	1140	Pfam	TIR domain	7	181	IPR000157	GO:0007165
	Vium725g00008	1140	ProSiteProfiles	TIR domain profile.	5	180	IPR000157	GO:0007165
	Vium725g00008	1140	Gene3D	-	5	178	IPR035897	-
	Vium725g00008	1140	PRINTS	Disease resistance protein signature	695	711	-	-
	Vium725g00008	1140	PRINTS	Disease resistance protein signature	382	396	-	-
	Vium725g00008	1140	PRINTS	Disease resistance protein signature	215	230	-	-
	Vium725g00008	1140	PRINTS	Disease resistance protein signature	291	305	-	-
	Vium725g00008	1140	Gene3D	-	179	345	IPR027417	-
	Vium725g00008	1140	Pfam	NB-ARC domain	197	433	IPR002182	GO:0043531
	Vium725g00008	1140	Gene3D	-	347	431	IPR042197	-
	Vium725g00008	1140	SMART	till_3	6	153	IPR000157	GO:0007165
	Vium725g00008	1140	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	7	768	IPR044974	GO:0006952
	Vium725g00008	1140	Gene3D	Ribonuclease Inhibitor	545	817	IPR032675	-
	Vium725g00008	1140	SUPERFAMILY	L domain-like	549	804	-	-
	Vium725g00008	1140	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	155	IPR035897	-
	Vium725g00008	1140	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	180	441	IPR027417	-
	Vium725g00008	1140	SMART	AAA_5	212	349	IPR003593	GO:0016887
	Vium725g00008	1140	FunFam	Disease resistance protein (TIR-NBS-LRR class)	3	182	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium725g00008	Vium-Chr725	25945	35244	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium725g00008	1	778	WRKY Transcription Factor Family	AT4G12020	31.683	9.48e-85	301

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium725g00008	-		-	var:108344624	1511.12