Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7256g00003 ATGGCATCGCCTTCTGCGGCGTTCGAATTTCGCCTTAATCGATGTTTGAACGCCAACGAGACCAGAATCAGAAACCCTATGGTATACCACCCTCACACCCTAATTGGAAATGAATCACCTAAACTTCTTCCTCTGCAAAACCGGGGTGGTCAACACTCGCCTAGCAATTCACTAGAGGGTAAGACATCTGAAACAAGCATAGAGTTTGGAAATGGTGAATTCAGCTCGGAGGAGCTAAAGAAAATAAAGGAGAATGATAAACTTGTTGAAATTGCCATGGTTGATCCTAAACGTGAAAAAAGGATTTTGGCCAATAGGCTATCTGCTGCTTGCTCGAAAGAGCGGAAGATGCGATACATTTCTGAATTGGAGCTTAAAGTCCAAACACTTCAGACAGAGTCAACCACATTGTCTACTCAATTTACTTGTCTGCATATGGACAATTCAGCGCTTAAAAGTGAGAACAATGAGTACAAATTGAGGATTCAAGCCTTGGAACAACAGTCCCAACTGAAAGATGATGTTTTAGGGTGGTTTGGATCCGTGGTTGCTGTTGGCATGGATTTCAAGTGA 573 0.4276 MASPSAAFEFRLNRCLNANETRIRNPMVYHPHTLIGNESPKLLPLQNRGGQHSPSNSLEGKTSETSIEFGNGEFSSEELKKIKENDKLVEIAMVDPKREKRILANRLSAACSKERKMRYISELELKVQTLQTESTTLSTQFTCLHMDNSALKSENNEYKLRIQALEQQSQLKDDVLGWFGSVVAVGMDFK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7256g00003 190 Gene3D - 95 154 - -
Vium7256g00003 190 Pfam bZIP transcription factor 97 155 IPR004827 GO:0003700|GO:0006355
Vium7256g00003 190 MobiDBLite consensus disorder prediction 44 68 - -
Vium7256g00003 190 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 95 158 IPR004827 GO:0003700|GO:0006355
Vium7256g00003 190 CDD bZIP_plant_RF2 98 148 IPR044759 GO:0003700|GO:0006355
Vium7256g00003 190 MobiDBLite consensus disorder prediction 39 68 - -
Vium7256g00003 190 SUPERFAMILY Leucine zipper domain 97 146 IPR046347 GO:0003700|GO:0006355
Vium7256g00003 190 Coils Coil 148 168 - -
Vium7256g00003 190 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 39 174 - -
Vium7256g00003 190 SMART brlzneu 93 157 IPR004827 GO:0003700|GO:0006355
Vium7256g00003 190 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7256g00003 Vium-Chr7256 49549 56941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7256g00003 53 173 bZIP Transcription Factor Family AT2G21230 62.810 5.06e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium7256g00003 bZIP_1 5.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7256g00003 - - vum:124844949 367.081