Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium724g00013 ATGGAGCCCGTTTGCCCTATTGGGTTGGCGTGTGCCTCTGAAATCTCTGCTCTTCTCTCTCCTCCCTCACCTCTTCAAGTACAGGAATATTATCACAACCTTTTGTCTTCAAGAGGGTGCTCTGGTATCTCAGTCAAACAGGATGGCAACTTTGGAAAAGGTGTATATGCAGACATGGACTTCAAAGAGGGAGAACTTGTTCTGAAGGACCCCATGTGTGTAGGGGTTCAACATTCCCTTAACAAGATTGATTGTTTGGTCTGTAGTTTCTGCTTTCGTTTCATTGGTTCCATTGAACTTCAAATAGGAAGGAGGCTTTACATGAAGCAACTAAGGGCCAATGAGAGTCATGGATGTGATGTCGGAAACTCTTCACAACACTTCCATGGAATGGATTCATCTGATGAAGAAGAGAATACTCAGCATTGTACTTCTGGGATTTCCAAAACTAAGGTTCCTCTTCCTGAGGGTGTTGTGGAATCATTAATGAAGGGCCAACTGATGTTGCCTTGCTCCGAGAAGTTCACCTTGTTGCCGGCTGTTCCATGCCCTGGTGGGTGTGGAGAAGCTTACTATTGCAGCATGTCATGTGCAGAGGCTGATTGGGAATCCTCCCATTTGTTACTCTGTACTGGTGAGAGTTCTGATCCAGCTCGTAGAGAGGCACTCCTTAAATTCATCAAACATGCTAATGAAACAAATGATATATTCATACTTGCTGCAAAGGCTATTTCTTCAACCATATTAAGATATAGCAAGGTAAAAGCAGCCAGTCTTGAAAAACAAGTGAAACATGATACATCCTGTGTTTCAAATCACCGTAGTTTATCTTTTCTTTTGGAAGCTTGGAGGCCTATATCAATGGGACACAAGAGAAGGTGGTGGGACTGTATTGCTTTGCCAGATGATGTGGATTCTTCTGACGAAGCATCATTCAGGCTGCAAATCAAAGAGTTGGCATTTGAGTCTCTACAACTTCTTAAGGTAGCCATTTTTGACAAGGAATGTGAGCCATTATTCTCCCTTGAAATCTATGGACATATCATTGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTGGCTTCTCCGGTGGAGGATTACTTTTTATACATTGATGATCTGACACATCCTAACAAGGAAGAGGCTGAGAAAATTACGCAACCTATTCTGGATGCACTTGGTGAAGACTATTCTATTTGTTGCGAAGGGACTGCATTTTTTCCTTTGCAAAGCTGCATGAACCATTCCTGTTGTCCTAATGCCAAAGCTTTCAAAAGAGATGAGGATAAAGATGGCCAAGCAACAATAATTGCACATAGGTTCATTCGTAAAGGGGAAGAGATAACCATATCATATGTTGATGAGGACCTTCCATTTGAAGAAAGGCAGGCATCCCTTGCAGATTATGGTTTCAGATGCAGGTGTCCAAAGTGCATTGAAGAAGAGCCATAA 1455 0.4227 MEPVCPIGLACASEISALLSPPSPLQVQEYYHNLLSSRGCSGISVKQDGNFGKGVYADMDFKEGELVLKDPMCVGVQHSLNKIDCLVCSFCFRFIGSIELQIGRRLYMKQLRANESHGCDVGNSSQHFHGMDSSDEEENTQHCTSGISKTKVPLPEGVVESLMKGQLMLPCSEKFTLLPAVPCPGGCGEAYYCSMSCAEADWESSHLLLCTGESSDPARREALLKFIKHANETNDIFILAAKAISSTILRYSKVKAASLEKQVKHDTSCVSNHRSLSFLLEAWRPISMGHKRRWWDCIALPDDVDSSDEASFRLQIKELAFESLQLLKVAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLTHPNKEEAEKITQPILDALGEDYSICCEGTAFFPLQSCMNHSCCPNAKAFKRDEDKDGQATIIAHRFIRKGEEITISYVDEDLPFEERQASLADYGFRCRCPKCIEEEP 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium724g00013 484 CDD SET_SMYD 393 479 - -
Vium724g00013 484 Pfam MYND finger 181 210 IPR002893 -
Vium724g00013 484 Pfam SET domain 52 453 IPR001214 GO:0005515
Vium724g00013 484 Gene3D SET domain 373 483 IPR046341 -
Vium724g00013 484 MobiDBLite consensus disorder prediction 129 148 - -
Vium724g00013 484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 483 IPR044237 GO:0008168
Vium724g00013 484 ProSiteProfiles SET domain profile. 41 454 IPR001214 GO:0005515
Vium724g00013 484 SUPERFAMILY HIT/MYND zinc finger-like 178 211 - -
Vium724g00013 484 SUPERFAMILY SET domain 41 479 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium724g00013 SET 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium724g00013 - - gmx:100803651 875.93