Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium724g00005 ATGGAACCTCTGTGTGAGTTTTGTTGGGCTGTGATAGCTGTGGTTTATTGCAAGTCAGATTGTGCTCGTCTCTGCTTGCATTGCGATGGCTGTGTGCACTCCGCAAATTCTCTGTCTCGCAGGCATTCGCGTTCTCTCCTTTGTGATAAGTGCTATTCCCAGCCAGCAGTGATACGTTGCATGGATCATAAGTTGTCCTCGTGTCAAAGTTGTGACTGGAACCCGACTGCTTGTTTTGCAGCGGGACATAGGCGCCTCACGTTGAATTGTTACAATGGTTGTCCTTCTTTGTCTGAGTTTTCTAGGATGTGGTCCTTTGTGTTTGATGATAGTTCCTCACAAGCTGGTTGGGAATCTGTTAGCACTTTGCCAAAAAGTGATAGCTGCACTAGCCTGGAGCAACCTGATCACAATGGTGGTTCCTTTAGTTTGGTGATTGAGAAGTTGGATGAAATTGAATCTTGTGTCAGATATGAACCTTGGATGGGGCAACCTCACATCATTCCTTCAAATCCAAATTACACACCGTACTGCAAGGAAGAAGGATTTTTCCTAGCTCAGGACTCAAACCAGCCAAAGACGCAGGAGTGTACTGATCGAGGAACTGGTGATGGGAATGGACTCTCTGAAGGTCTCAATGTGGACAGAGCTCCAATAAATTTTGAAAGTGCTGAAGAAATATTTGGCTGTTCACAAGCTGCCACTAGATACCCTCTTGAAGATGGAGGAGTGGACTGTCTATTGATGGATAAAAAATTATCAGTCACCGAATCTAGTTCACTTATTGAGAGTGCCTTAGAGGCATCATCATCAATTCAACAAGATTGTGTGGCTTTTCAGTCATCTAGGACACCTGGATCAGTTAGTATGTTGCAGGTTATGAACAGTAACACAAACTGTGCACTTATGAATCCTAGCAGCACTGGAAACATCAGTCTGGGATTTCCTCAGGGTCAAGTTCATTCAAGCATACCTCTTCAATTAGGCAACATTGTGGGTGAAAATAGTTCTACTGAATATCAAGACTGCGGGATGTCGCCAATGTTTCTGCCGGGTGAAATCCCCCGGGAATCAAATTTGGAGGGTACATGCCCACAAGCAAGGGATAAGGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCATCTCGGAAAGCAAGGGCCGATACTAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGCGAAGCATATGATTATGACCCTCTTGTGACAAGGGAGGTCTAA 1275 0.44 MEPLCEFCWAVIAVVYCKSDCARLCLHCDGCVHSANSLSRRHSRSLLCDKCYSQPAVIRCMDHKLSSCQSCDWNPTACFAAGHRRLTLNCYNGCPSLSEFSRMWSFVFDDSSSQAGWESVSTLPKSDSCTSLEQPDHNGGSFSLVIEKLDEIESCVRYEPWMGQPHIIPSNPNYTPYCKEEGFFLAQDSNQPKTQECTDRGTGDGNGLSEGLNVDRAPINFESAEEIFGCSQAATRYPLEDGGVDCLLMDKKLSVTESSSLIESALEASSSIQQDCVAFQSSRTPGSVSMLQVMNSNTNCALMNPSSTGNISLGFPQGQVHSSIPLQLGNIVGENSSTEYQDCGMSPMFLPGEIPRESNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTREV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium724g00005 424 ProSiteProfiles CCT domain profile. 368 410 IPR010402 GO:0005515
Vium724g00005 424 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 413 - -
Vium724g00005 424 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vium724g00005 424 MobiDBLite consensus disorder prediction 190 212 - -
Vium724g00005 424 Pfam CCT motif 368 410 IPR010402 GO:0005515
Vium724g00005 424 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium724g00005 Vium-Chr724 40473 44420 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium724g00005 1 418 C2C2-CO-like Transcription Factor Family AT3G21880 43.365 1.47e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium724g00005 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium724g00005 - - vra:106761521 846.654