Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium724g00004 ATGGAACCTCTGTGTGAGTTTTGTTGGGCTGTGATAGCTGTGGTTTATTGCAAGTCAGATTGTGCTCGTCTCTGCTTGCATTGCGATGGCTGTGTGCACTCCGCAAATTCTCTGTCTCGCAGGCATTCGCGTTCTCTCCTTTGTGATAAGTGCTATTCCCAGCCAGCAGTGATACGTTGCATGGATCATAAGTTGTCCTCGTGTCAAAGTTGTGACTGGAACCCGACTGCTTGTTTTGCAGCGGGACATAGGCGCCTCACGTTGAATTGTTACAATGGTTGTCCTTCTTTGTCTGAGTTTTCTAGGATGTGGTCCTTTGTGTTTGATGATAGTTCCTCACAAGCTGGTTGGGAATCTGTTAGCACTTTGCCAAAAAGTGATAGCTGCACTAGCCTGGAGCAACCTGATCACAATGGTGGTTCCTTTAGTTTGGTGATTGAGAAGTTGGATGAAATTGAATCTTGTGTCAGATATGAACCTTGGATGGGGCAACCTCACATCATTCCTTCAAATCCAAATTACACACCGTACTGCAAGGAAGAAGGATTTTTCCTAGCTCAGGACTCAAACCAGCCAAAGGAGTGTACTGATCGAGGAACTGGTGATGGGAATGGACTCTCTGAAGGTCTCAATGTGGACAGAGCTCCAATAAATTTTGAAAGTGCTGAAGAAATATTTGGCTGTTCACAAGCTGCCACTAGATACCCTCTTGAAGATGGAGGAGTGGACTGTCTATTGATGGATAAAAAATTATCAGTCACCGAATCTAGTTCACTTATTGAGAGTGCCTTAGAGGCATCATCATCAATTCAACAAGATTGTGTGGCTTTTCAGTCATCTAGGACACCTGGATCAGTTAGTATGTTGCAGGTTATGAACAGTAACACAAACTGTGCACTTATGAATCCTAGCAGCACTGGAAACATCAGTCTGGGATTTCCTCAGGGTCAAGTTCATTCAAGCATACCTCTTCAATTAGGCAACATTGTGGGTGAAAATAGTTCTACTGAATATCAAGACTGCGGGATGTCGCCAATGTTTCTGCCGGGTGAAATCCCCCGGGAATCAAATTTGGAGGGTACATGCCCACAAGCAAGGGATAAGGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCATCTCGGAAAGCAAGGGCCGATACTAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGCGAAGCATATGATTATGACCCTCTTGTGACAAGGGAGGTCTAA 1269 0.4389 MEPLCEFCWAVIAVVYCKSDCARLCLHCDGCVHSANSLSRRHSRSLLCDKCYSQPAVIRCMDHKLSSCQSCDWNPTACFAAGHRRLTLNCYNGCPSLSEFSRMWSFVFDDSSSQAGWESVSTLPKSDSCTSLEQPDHNGGSFSLVIEKLDEIESCVRYEPWMGQPHIIPSNPNYTPYCKEEGFFLAQDSNQPKECTDRGTGDGNGLSEGLNVDRAPINFESAEEIFGCSQAATRYPLEDGGVDCLLMDKKLSVTESSSLIESALEASSSIQQDCVAFQSSRTPGSVSMLQVMNSNTNCALMNPSSTGNISLGFPQGQVHSSIPLQLGNIVGENSSTEYQDCGMSPMFLPGEIPRESNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTREV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium724g00004 422 MobiDBLite consensus disorder prediction 191 211 - -
Vium724g00004 422 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vium724g00004 422 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 411 - -
Vium724g00004 422 CDD Bbox1_BBX-like 4 47 - -
Vium724g00004 422 ProSiteProfiles CCT domain profile. 366 408 IPR010402 GO:0005515
Vium724g00004 422 Pfam CCT motif 366 408 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium724g00004 Vium-Chr724 40473 44420 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium724g00004 1 416 C2C2-CO-like Transcription Factor Family AT3G21880 43.333 1.72e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium724g00004 CCT 1.4e-16 CL0281