Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7239g00006 ATGGCAATCGGAAAGAACTTTTTTGTTCTGTTTTATTTGGCAGTCTTAATCCCTACCCTGAATGCCAATCCCTTGGAGGATGATCAGTATTGGAAGAACCATGAAAACGAGTTTGATACATACTGGAAGGATCGGGCACAAAAGGCTGCAGAGGACAATAAAGCAGCATACTTTGAAGATCCATATTCAGTCTCGGGAAACTTCACTTCCTCTGTCAGCGAACTTATAGTTGGGAAGGATACGCGAAGGAGCTTGAAGGGAAAGAACGGTGACGGGGGGCCATGCATGGCGACGAACCCCATTGACAGGTGCTGGAGGTGTGACCCCAACTGGGCCAACAACAGGCAGAAGCTTGCAGATTGTGTTCAGGGCTTTGGAAGAAACACCGTTGGAGGAAAAGGTGGTCCGATCTACGTGGTAACAGACCCTTCAGACGATAACATGGTTGACCTAAAGCCAGGAACTCTCCGCCATGCAGTTACACGTAATGGCCCGTTGTGGATCATCTTTGAACGCAACATGATCATCCACCTGAAGCAGGAGCTCATCATGACCAGCAACAAGACCATTGATGGAAGAGGCGTTGATGTCTACATTTCCAATGGTGCTGGCATCACCATCCAGTTCATCAAGAACGTGATCATTCATGGAATTAAGGTCTACGACATTTCCGTTCATGGTGGTGGGCTGATCAGAGATTCTGAGACACATTATGGGCTCAGGACTCAGAGTGATGGAGATGGCATTTCCATCTTTGGTTCTAGCAACATTTGGATCGATCATGTTTCCATGAGAAATTGCTACGATGGACTTATCGATGCCATCATGGGATCCACTGCCATTACGATTTCCAATAGCCATTTCACAGACCACAACGAGGCGATGCTGTTCGGTGCCAGCGACAGCTACGATGCAGATAAGATCATGCAAATCACTCTGGCATTCAACCACTTTGGGAAGAGATTGATTCAAAGGATGCCCAGATGCAGACATGGTTTCTTCCATGTGGTCAACAACGATTACACTCACTGGGAAATGTATGCGATTGGAGGGAGCATGAACCCCACGATCATAAGCGAGGGTAACAGATTCATTGGCCCTGACAACATATATGCTAAGGAGATCACAAAGAGAGAATACTCTCCTGAGAACGTGTGGAAACAATGGCAGTGGAGATCAATCAACGATGAGTACATGAACGGAGCATTTTTTGTGCAATCTGGGCCTGAGCTTGTTAACAGACCATTCTCAAGGCTAGACATGATCAAAGCCAAGCCAGGAAGTTACGTCGGAAGGCTTACACGCTATTCTGGAAGCCTTAAGTGCAGAGTGGGTTTCCCTTGCTAA 1347 0.4692 MAIGKNFFVLFYLAVLIPTLNANPLEDDQYWKNHENEFDTYWKDRAQKAAEDNKAAYFEDPYSVSGNFTSSVSELIVGKDTRRSLKGKNGDGGPCMATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTVGGKGGPIYVVTDPSDDNMVDLKPGTLRHAVTRNGPLWIIFERNMIIHLKQELIMTSNKTIDGRGVDVYISNGAGITIQFIKNVIIHGIKVYDISVHGGGLIRDSETHYGLRTQSDGDGISIFGSSNIWIDHVSMRNCYDGLIDAIMGSTAITISNSHFTDHNEAMLFGASDSYDADKIMQITLAFNHFGKRLIQRMPRCRHGFFHVVNNDYTHWEMYAIGGSMNPTIISEGNRFIGPDNIYAKEITKREYSPENVWKQWQWRSINDEYMNGAFFVQSGPELVNRPFSRLDMIKAKPGSYVGRLTRYSGSLKCRVGFPC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7239g00006 448 Pfam Pectate lyase 180 364 IPR002022 -
Vium7239g00006 448 Gene3D - 98 441 IPR012334 -
Vium7239g00006 448 PANTHER PECTATE LYASE 18-RELATED 52 445 IPR045032 GO:0030570
Vium7239g00006 448 Pfam Pectate lyase, N terminus 37 85 IPR007524 GO:0030570
Vium7239g00006 448 SUPERFAMILY Pectin lyase-like 99 438 IPR011050 -
Vium7239g00006 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Vium7239g00006 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Vium7239g00006 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Vium7239g00006 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Vium7239g00006 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Vium7239g00006 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Vium7239g00006 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Vium7239g00006 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Vium7239g00006 448 SMART amb_all 173 370 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7239g00006 Vium-Chr7239 79064 80707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7239g00006 1 448 Polysaccharide Lyase AT1G14420 57.204 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7239g00006 K01728 - gmx:100798579 749.584