Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7239g00005 ATGGAGCTTGCACCTGTGAAATGTGAACTGAGCCCTAGAAACCATAGGTTGCTTGTTATAGATGGTAGTGAGGTTATTGCTGCTAAGTGTGTCAAAAGGAGGCGAAGAGGTTCGTCTATGTCAGTGTTAGGTGGCAATGAACAACAAGGTGAAAAGTTAGAAGAACATAAACAACTTGGTACTGCCACCACTGTGAAGAGAAGTTCAAGGTTCAGGGGTGTTAGCAGACACAGGTGGACTGGAAGGTTTGAAGCACATCTATGGGATAAAGGGACATGGAATCCCACTCAGAAGAAGAAAGGAAAGCAAGTGTATTTGGGAGCTTATAATGATGAAGAAGCGGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACAAATTTTCCTGTGTCTGATTATGAGAAAGAAATTGAGATAATGAAAACAGTAACCAAAGAAGAATATCTTGCTTCACTGAGAAGGAGGAGCAGTGGTTTTTCCAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAGGCAAGAATTGGGAGAGTGTTTGGCAACAAGTACCTATACCTTGGGACTTACAGTACACAAGAAGAAGCAGCTCGTGCATATGACATTGCAGCAATTGAGTACAGAGGCATAAATGCTGTGACAAACTTTGACTTGAGCACCTACATCAGATGGCTAAGACCAGGAACACATCCTATTGCTTCACATGATCAAAAGCCTGGCACAGACCCTCAACCCTTTGCTACCTCTAACTCAATGCAAACAAGAGGGAACATTGAGGTATCCAACTCTAACATGCATTCATTCTCCTCAGCTGAATTAGACAGTACCAAGAAGCAAGACTTTTCCAAGTATATGAACCCTTTGAGCCCTTGCAACAAGCCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCAACAGTGTTCAGAGAATTGATGCAGAGAAATCTGAACTCCTCTAGTGAGGAAGGTGAAGAAGTTGAATTGAAATACCCACAAGAAGGAAATGATGGAAATGGAGGGACTTATTACAGTGACAACACCAGTAACTCTTACTTTTGCTCTTCTGATATCAACAGATTACCAAACCTGGAGTCACCAGAAGAAAGTTCATTGCCTATGTATCATGGAACTGTGCAATCCCTATGGAATAGTTCTTTCAACATGTCTAATTGA 1215 0.4214 MELAPVKCELSPRNHRLLVIDGSEVIAAKCVKRRRRGSSMSVLGGNEQQGEKLEEHKQLGTATTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGTHPIASHDQKPGTDPQPFATSNSMQTRGNIEVSNSNMHSFSSAELDSTKKQDFSKYMNPLSPCNKPSSPTALGLLLKSTVFRELMQRNLNSSSEEGEEVELKYPQEGNDGNGGTYYSDNTSNSYFCSSDINRLPNLESPEESSLPMYHGTVQSLWNSSFNMSN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7239g00005 404 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 302 - -
Vium7239g00005 404 Gene3D AP2/ERF domain 171 232 IPR036955 GO:0003700|GO:0006355
Vium7239g00005 404 Gene3D AP2/ERF domain 69 138 IPR036955 GO:0003700|GO:0006355
Vium7239g00005 404 ProSiteProfiles AP2/ERF domain profile. 172 230 IPR001471 GO:0003700|GO:0006355
Vium7239g00005 404 SUPERFAMILY DNA-binding domain 69 138 IPR016177 GO:0003677
Vium7239g00005 404 FunFam AP2-like ethylene-responsive transcription factor 171 232 - -
Vium7239g00005 404 MobiDBLite consensus disorder prediction 245 264 - -
Vium7239g00005 404 ProSiteProfiles AP2/ERF domain profile. 70 136 IPR001471 GO:0003700|GO:0006355
Vium7239g00005 404 MobiDBLite consensus disorder prediction 330 357 - -
Vium7239g00005 404 FunFam AP2-like ethylene-responsive transcription factor 69 138 - -
Vium7239g00005 404 MobiDBLite consensus disorder prediction 40 67 - -
Vium7239g00005 404 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Vium7239g00005 404 PRINTS Ethylene responsive element binding protein signature 212 232 IPR001471 GO:0003700|GO:0006355
Vium7239g00005 404 Pfam AP2 domain 69 128 IPR001471 GO:0003700|GO:0006355
Vium7239g00005 404 Pfam AP2 domain 171 222 IPR001471 GO:0003700|GO:0006355
Vium7239g00005 404 SMART rav1_2 70 142 IPR001471 GO:0003700|GO:0006355
Vium7239g00005 404 SMART rav1_2 172 236 IPR001471 GO:0003700|GO:0006355
Vium7239g00005 404 SUPERFAMILY DNA-binding domain 171 232 IPR016177 GO:0003677
Vium7239g00005 404 CDD AP2 171 232 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7239g00005 Vium-Chr7239 63195 65872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7239g00005 66 234 AP2-EREBP Transcription Factor Family AT5G57390 69.822 1.45e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium7239g00005 AP2 5.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7239g00005 - - gmx:100798483 733.791