Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7239g00004 ATGATTTCCAACCAAATCCACGCGTTTCGCTCTGCATTTCGCGTTCTCAGATATCCATGCACAAACTCACCAAACGCGCGTCCTTTGCTTTTGCTTCATCCTAACACACCAACCACCCTTTGTTCTTCACTCACTGACGACTCCTTTTCCACACCAAAACCAAACCAGTTGGGCTACAATCCTCCAGAGGAACTGTTCGAGCTGGAGGTGGAGCTCAAACCAAGCAAGGGTAAGTCTCATACACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGGGAGCTACCTTGTCCGAGTTGCCGAGCAAGGGGTTATACACCTTGTACAGAGTGTGGAATAGAAAGATCAAGGCCAGACTGTCCAAAATGTTATGGAAAGGGTATATTGACTTGCCACCAATGCTCTGGAGATCGTGTTATATGGGAGGAATCAATTGATGAAAAACCATGGGAGAGGGCCCATTCTATTTCCCCACTCAAAGTGAAGGAAGATGATGAAGTTGACAAATTAGACATAAAGCTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCAATCACCACCTCCAGAAGTTGGACTGAAGATTAGTCGTTCATTAAAAAGTCTGAATGCCAAAACTGGTCTGTTTAGCAACCGAATGAAGATTATTCACCAGGATCCCAAGCTTCAGGCACAGCGTGTGGCTGCTATCAAGAAAGCCAAGGGAACTGTTGCAGCAAGGAGACACACTTCCAAAACTATGAAAGCTTTCTTTAGTGATCCAATAAACCGACAGAAAAGGAGCATGGCCATGAAAGGAGTAAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGATACTACTGTCCAGAACTCAAGGATACCTCTATTGATCGGCGATTCACGTGTAGGGTCTGTGGGGAAAAAGGTCACAACAGAAGAACATGCAGAATGATGGTAAGCCATAGCAATGAGAGACTGATAAAACAGCACCAGTGTAGGGTCTGTGGGGAAAAGGGCCACAACAGAAGAACGTGTAGGACGTTAAGGATAAGCCTTAGAAAGGGGAGAGTGATAAAACACCGAAAGTGTAAAGTATGTCACCAATTCGGCCATAACCGCAGAACCTGTCCTGAAGTTGTTCCTAGTAAAAGAAACACGGTCTCTCGAAGGCAATACAAGTGTAGGTTGTGCAAGAAAAAGGGTCATAACAGTAGGACATGTCCAAGTAAGACAGATGTTACTGAACAACCTCAAGATTAA 1257 0.4463 MISNQIHAFRSAFRVLRYPCTNSPNARPLLLLHPNTPTTLCSSLTDDSFSTPKPNQLGYNPPEELFELEVELKPSKGKSHTPEPRSWFGPNGQYIRELPCPSCRARGYTPCTECGIERSRPDCPKCYGKGILTCHQCSGDRVIWEESIDEKPWERAHSISPLKVKEDDEVDKLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKKAKGTVAARRHTSKTMKAFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRYYCPELKDTSIDRRFTCRVCGEKGHNRRTCRMMVSHSNERLIKQHQCRVCGEKGHNRRTCRTLRISLRKGRVIKHRKCKVCHQFGHNRRTCPEVVPSKRNTVSRRQYKCRLCKKKGHNSRTCPSKTDVTEQPQD 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7239g00004 418 ProSiteProfiles Zinc finger CCHC-type profile. 331 345 IPR001878 GO:0003676|GO:0008270
Vium7239g00004 418 Gene3D - 357 417 - -
Vium7239g00004 418 SUPERFAMILY Retrovirus zinc finger-like domains 381 414 IPR036875 GO:0003676|GO:0008270
Vium7239g00004 418 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 56 315 - -
Vium7239g00004 418 ProSiteProfiles Zinc finger CCHC-type profile. 301 315 IPR001878 GO:0003676|GO:0008270
Vium7239g00004 418 SUPERFAMILY Retrovirus zinc finger-like domains 271 316 IPR036875 GO:0003676|GO:0008270
Vium7239g00004 418 SUPERFAMILY Retrovirus zinc finger-like domains 352 383 IPR036875 GO:0003676|GO:0008270
Vium7239g00004 418 SMART c2hcfinal6 392 408 IPR001878 GO:0003676|GO:0008270
Vium7239g00004 418 SMART c2hcfinal6 273 289 IPR001878 GO:0003676|GO:0008270
Vium7239g00004 418 SMART c2hcfinal6 330 346 IPR001878 GO:0003676|GO:0008270
Vium7239g00004 418 SMART c2hcfinal6 300 316 IPR001878 GO:0003676|GO:0008270
Vium7239g00004 418 SMART c2hcfinal6 361 377 IPR001878 GO:0003676|GO:0008270
Vium7239g00004 418 ProSiteProfiles Zinc finger CCHC-type profile. 274 289 IPR001878 GO:0003676|GO:0008270
Vium7239g00004 418 Gene3D - 271 325 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7239g00004 13 376 C2H2 Transcription Factor Family AT5G20220 57.584 7.59e-148 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7239g00004 - - var:108323927 840.106