Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7239g00002 ATGTCCAACTTGCAGTTTCAACTGCACTCTCAACCATCAACCTTGTCATCTTTGTCTTCATTATCGTCTTCTTCTCTTAAGCTATTAGCAAACCACTCTTTCTCCCCAAATTCTCTTCCTTTTAACCCTCCTAAACCCTTTTCCCTCAGATGTCGCCACTCTGACCTCTTCGACCAGAACACCTTAGCCTCCTCACAACGACCCACAAGACCCACTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACTTTGACTCCTAGGCCACCGGAATTCGTGCCGCTCGATTCAGGGGCATATAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCTGCGGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCAGTGGGTGAAATGGGAAGTGTAATAAGCCTTGGTACAAGGGAGTCCTGTGAATTTTTTCATGATCCTTTTAAGGGCAAAAGTGATGAAGGTAAAGTCAGAAAAATTTTGAAGTTGGAGCCTCTTCCAGATGGTTCTGGGCACTTCTTTAACCTAAGTGTTCAAAACAAGCTTGTAAACGTGGATGAAAACATCTATATCCCTATTACAAAAGCAGAGTTAGCAGTTTTGAGCTCAACTTTCAATTTTATCATGCCATACCTTCTTGGTTGGCATACCTTTGCAAACTCCATAAAGCCAGAGGACACTAGTGGAGTGAATAATGCCAACCCAAGATATGGAGGTGATTATGAATGGAACAGATAG 795 0.434 MSNLQFQLHSQPSTLSSLSSLSSSSLKLLANHSFSPNSLPFNPPKPFSLRCRHSDLFDQNTLASSQRPTRPTASVGALPPRVYVGYSIYKGKAALTLTPRPPEFVPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGTRESCEFFHDPFKGKSDEGKVRKILKLEPLPDGSGHFFNLSVQNKLVNVDENIYIPITKAELAVLSSTFNFIMPYLLGWHTFANSIKPEDTSGVNNANPRYGGDYEWNR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7239g00002 264 Gene3D Transcriptional Coactivator Pc4; Chain A 76 252 IPR009044 GO:0003677|GO:0006355
Vium7239g00002 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 28 264 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vium7239g00002 264 SUPERFAMILY ssDNA-binding transcriptional regulator domain 80 264 IPR009044 GO:0003677|GO:0006355
Vium7239g00002 264 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 73 248 - -
Vium7239g00002 264 Pfam Whirly transcription factor 88 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7239g00002 Vium-Chr7239 36522 39717 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7239g00002 21 264 Whirly Transcription Factor Family AT1G14410 65.726 4.80e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vium7239g00002 Whirly 3.6e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7239g00002 K26559 - gmx:100789252 439.499