Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium721g00005 ATGTTCACAACACTACAACCTCTGCAACAATCAAACCCTTCAACACTTTCCACCTTAACAATTCATCATATCATGAGTTTTGATGAAACACCAAACACAGGACTTGGTCTTGGTCTTGGTCTTGGCCTTGGTCTTGGTCTTGTTACCTTCCATGATCAATCAGAGAACTGCATGAAGAGTGATGCCCACAACATCAGAAGGGTGGAGAATCCATCAGACTGTAACAAGACATACCCTTCACTTACTTTAGGACCACCAGAAGATGACGATCATGATGAAGTGAAAAATGATCGACCAAGTTCAAAGACAGAGTCCTATGAATATTTTCGGGCACAGGTTTCTTCTCCCAGTGTGGTTTCTTCATTTTCCAACTCCTCTAGCATCAAGAGGGAGCGAGATCAGGCCACGGGAGAAGAATTTGATGTAGACCTAGAGAACGTTCAAACAAGGGTAGCAGATGCTGACGAAGATGGTAACCCCAGAAAGAAACTTAGACTCACCAAAGAACAATCAGCAATCTTGGAAGAAACCTTCAGAGAACATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAATGAAGCTGAATCTGCGAACCAGACAAGTAGAAGTGTGGTTTCAGAACAGGAGAGCCAGGACAAAGCTAAAACAAACTGAGTCAGATTGTGATCTATTGAAGAAGTGTTGTGACAGTCTGACAGAAGAAAACAAGAGGTTGCAAAAGGAGGTTGAAGAACTAAAGTCAATGCAAGCAATGTCAGTGCCTCTTTACATGCAGATTCCAGCAGCCACACTTTCCCTATGCCCTTCTTGTGAGAGAATTTGTGGTAGTAAAAGTGATGATGAAAATACCAACAACAATACTTCTTCATTGCTTTTTCCTTCAAAAACACATCATCATCACTTTTACAAAAGTAACTATCCTTTCTCCCACTCTTCGTCTGCAGCATGCTAA 957 0.4169 MFTTLQPLQQSNPSTLSTLTIHHIMSFDETPNTGLGLGLGLGLGLGLVTFHDQSENCMKSDAHNIRRVENPSDCNKTYPSLTLGPPEDDDHDEVKNDRPSSKTESYEYFRAQVSSPSVVSSFSNSSSIKRERDQATGEEFDVDLENVQTRVADADEDGNPRKKLRLTKEQSAILEETFREHSTLNPKQKQELAMKLNLRTRQVEVWFQNRRARTKLKQTESDCDLLKKCCDSLTEENKRLQKEVEELKSMQAMSVPLYMQIPAATLSLCPSCERICGSKSDDENTNNNTSSLLFPSKTHHHHFYKSNYPFSHSSSAAC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium721g00005 318 CDD homeodomain 160 218 IPR001356 GO:0003677
Vium721g00005 318 FunFam Homeobox-leucine zipper protein 18 145 222 - -
Vium721g00005 318 MobiDBLite consensus disorder prediction 70 104 - -
Vium721g00005 318 MobiDBLite consensus disorder prediction 85 104 - -
Vium721g00005 318 SUPERFAMILY Homeodomain-like 158 225 IPR009057 -
Vium721g00005 318 ProSitePatterns 'Homeobox' domain signature. 192 215 IPR017970 GO:0000981|GO:0006355
Vium721g00005 318 SMART halz 217 261 IPR003106 GO:0006355|GO:0043565
Vium721g00005 318 Coils Coil 216 253 - -
Vium721g00005 318 Gene3D - 154 223 - -
Vium721g00005 318 Pfam Homeobox associated leucine zipper 217 250 IPR003106 GO:0006355|GO:0043565
Vium721g00005 318 Pfam Homeodomain 161 215 IPR001356 GO:0003677
Vium721g00005 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 40 291 - -
Vium721g00005 318 ProSiteProfiles 'Homeobox' domain profile. 157 217 IPR001356 GO:0003677
Vium721g00005 318 SMART HOX_1 159 221 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium721g00005 Vium-Chr721 43058 45273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium721g00005 25 318 Homeobox Transcription Factor Family AT4G37790 43.312 7.52e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium721g00005 Homeodomain 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium721g00005 K09338 - gmx:100807072 426.402