LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium721g00004	ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACTGCTCCAAGTCCAAGTTCAAGGCCTAATTTCTTGTACTCTCCCCCCAGTGGTGGAAGCCATAGCCATAGCCATAAGCATCATCAGTTTCCAATCAACACCTTCCATCTTCAATCGGGTGGATCAGATCATTGCTTTCAGTCTGATCAAGTGGCACCACACCCTTCTGTGAAAACCGAAGCCAGCACTTCTCAGCTTCACGCTCCTATTTTCCACTACCCTTTAATGAGAGGTACCCTTCACAACAACACCACCACCACTATGCATCACCATCCCCATCAACAAGGAGGGAGTCCTACAAGCTCCACCACCGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCCAATCTTTTGGAAGCTTATATGGATTGCCAAAAGATAGGAGCTCCACCTGAAGTGGTGGCGCGTATGGTTGCGGCAAAGCAAGAGTTTGAGGCACGGCAAAGATCCTCAGGTGGTTCCAGGGATACCTCGAAAGACCCTGAACTCGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATTCAAGAGGCCATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTATGCAATGGACCCGTCAGGATCTTCTCTGCAGAAGATAAATGTGAAGGGGTTGGTTCATCAGATGAGGATCAAGAGAACAGTGGAGGAGAAACAGAACTTCCGGAGATTGATCCTCGAGCAGAAGATCGTGAGCTTAAAAACCACTTACTGAGGAAGTACAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGGAAACTCCCCAAAGATGCAAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGAAAGAGGCACTGGAAACCATCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCCCAAAGTGCAACTCTCTACATGGATGGTCATTACATGGCAGATGGTCACTACCGTCTAGGGCCATGA	1149	0.45	MEEYTNNNHLSENTAPSPSSRPNFLYSPPSGGSHSHSHKHHQFPINTFHLQSGGSDHCFQSDQVAPHPSVKTEASTSQLHAPIFHYPLMRGTLHNNTTTTMHHHPHQQGGSPTSSTTEVEAIKAKIIAHPQYSNLLEAYMDCQKIGAPPEVVARMVAAKQEFEARQRSSGGSRDTSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSAEDKCEGVGSSDEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP	382

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium721g00004	382	ProSitePatterns	'Homeobox' domain signature.	322	345	IPR017970	GO:0000981\|GO:0006355
	Vium721g00004	382	ProSiteProfiles	'Homeobox' domain profile.	284	347	IPR001356	GO:0003677
	Vium721g00004	382	SMART	HOX_1	286	351	IPR001356	GO:0003677
	Vium721g00004	382	MobiDBLite	consensus disorder prediction	233	261	-	-
	Vium721g00004	382	Gene3D	-	289	351	-	-
	Vium721g00004	382	SMART	KNOX2_2	171	222	IPR005541	GO:0003677\|GO:0005634
	Vium721g00004	382	Pfam	Homeobox KN domain	304	343	IPR008422	GO:0003677\|GO:0006355
	Vium721g00004	382	CDD	homeodomain	296	348	IPR001356	GO:0003677
	Vium721g00004	382	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	53	354	-	-
	Vium721g00004	382	FunFam	Homeobox protein knotted-1-like 2	289	351	-	-
	Vium721g00004	382	Pfam	KNOX2 domain	175	221	IPR005541	GO:0003677\|GO:0005634
	Vium721g00004	382	Pfam	ELK domain	264	285	IPR005539	GO:0003677
	Vium721g00004	382	SMART	KNOX1_2	120	164	IPR005540	GO:0003677\|GO:0005634
	Vium721g00004	382	MobiDBLite	consensus disorder prediction	1	33	-	-
	Vium721g00004	382	Pfam	KNOX1 domain	121	163	IPR005540	GO:0003677\|GO:0005634
	Vium721g00004	382	SUPERFAMILY	Homeodomain-like	285	360	IPR009057	-
	Vium721g00004	382	ProSiteProfiles	ELK domain profile.	264	284	IPR005539	GO:0003677
	Vium721g00004	382	SMART	ELK_2	264	285	IPR005539	GO:0003677
	Vium721g00004	382	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium721g00004	Vium-Chr721	8365	14285	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium721g00004	55	382	Homeobox Transcription Factor Family	AT4G08150	70.238	9.10e-158	447

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Vium721g00004		KNOX2	2.7e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium721g00004	-		-	vum:124822256	731.48