Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium721g00002 ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACTGCTCCAAGTCCAAGTTCAAGGCCTAATTTCTTGTACTCTCCCCCCAGTGGTGGAAGCCATAGCCATAGCCATAGCCATAGCCATAACCATCACCAGCATCAGCATCAGCATCATAGTCATCACCACCAGCATCATCAGTTTCCAATCAACACCTTCCATCTTCAATCGGGTGGATCAGATCATTGCTTTCAGTCTGATCAAGTGGCACCACACCCTTCTGTGAAAACCGAAGCCAGCACTTCTCAGCTTCACGCTCCTATTTTCCACTACCCTTTAATGAGAGGTACCCTTCACAACAACACCACCACCACTATGCATCACCATCCCCATCAACAAGGAGGGAGTCCTACAAGCTCCACCACCGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCCAATCTTTTGGAAGCTTATATGGATTGCCAAAAGATAGGAGCTCCACCTGAAGTGGTGGCGCGTATGGTTGCTGCAAAGCAAGAGTTTGAGGCACGGCAAAGATCCTCAGGTGGTTCCAGGGATACTTCGAAAGACCCTGAACTCGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATTCAAGAGGCCATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTATGCAATGGACCCGTCAGGATCTTCTCTGAAGATAAATGTGAAGGGGTTGGTTCATCAGATGAGGATCAAGAGAACAGTGGAGGAGAAACAGAACTTCCGGAGATTGATCCTCGAGCAGAAGATCGTGAGCTTAAAAACCACTTACTGAGGAAGTACAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGGAAACTCCCCAAAGATGCAAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGAAAGAGGCACTGGAAACCATCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCCCAAAGTGCAACTCTCTACATGGATGGTCATTACATGGCAGATGGTCACTACCGTCTAGGGCCATGA 1200 0.45 MEEYTNNNHLSENTAPSPSSRPNFLYSPPSGGSHSHSHSHSHNHHQHQHQHHSHHHQHHQFPINTFHLQSGGSDHCFQSDQVAPHPSVKTEASTSQLHAPIFHYPLMRGTLHNNTTTTMHHHPHQQGGSPTSSTTEVEAIKAKIIAHPQYSNLLEAYMDCQKIGAPPEVVARMVAAKQEFEARQRSSGGSRDTSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSEDKCEGVGSSDEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium721g00002 399 ProSitePatterns 'Homeobox' domain signature. 339 362 IPR017970 GO:0000981|GO:0006355
Vium721g00002 399 SMART KNOX1_2 138 182 IPR005540 GO:0003677|GO:0005634
Vium721g00002 399 SUPERFAMILY Homeodomain-like 302 377 IPR009057 -
Vium721g00002 399 SMART HOX_1 303 368 IPR001356 GO:0003677
Vium721g00002 399 Pfam KNOX1 domain 139 181 IPR005540 GO:0003677|GO:0005634
Vium721g00002 399 Pfam ELK domain 281 302 IPR005539 GO:0003677
Vium721g00002 399 ProSiteProfiles 'Homeobox' domain profile. 301 364 IPR001356 GO:0003677
Vium721g00002 399 CDD homeodomain 313 365 IPR001356 GO:0003677
Vium721g00002 399 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 39 371 - -
Vium721g00002 399 Gene3D - 306 368 - -
Vium721g00002 399 MobiDBLite consensus disorder prediction 1 36 - -
Vium721g00002 399 Pfam Homeobox KN domain 321 360 IPR008422 GO:0003677|GO:0006355
Vium721g00002 399 SMART KNOX2_2 189 240 IPR005541 GO:0003677|GO:0005634
Vium721g00002 399 MobiDBLite consensus disorder prediction 112 134 - -
Vium721g00002 399 FunFam Homeobox protein knotted-1-like 2 306 368 - -
Vium721g00002 399 Pfam KNOX2 domain 193 239 IPR005541 GO:0003677|GO:0005634
Vium721g00002 399 SMART ELK_2 281 302 IPR005539 GO:0003677
Vium721g00002 399 MobiDBLite consensus disorder prediction 62 77 - -
Vium721g00002 399 MobiDBLite consensus disorder prediction 37 61 - -
Vium721g00002 399 MobiDBLite consensus disorder prediction 1 94 - -
Vium721g00002 399 MobiDBLite consensus disorder prediction 250 278 - -
Vium721g00002 399 ProSiteProfiles ELK domain profile. 281 301 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium721g00002 Vium-Chr721 725 6371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium721g00002 73 399 Homeobox Transcription Factor Family AT4G08150 69.940 3.10e-157 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium721g00002 KNOX2 2.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium721g00002 - - vum:124822256 751.895