Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7213g00001 ATGAAGCCTTTTTCTATGATGTTTTCGTTTATATATGTTCACCTGCTTTTCTACTTTACAAGCAACTCCAAACACAATGTTTTTGCTTCAGAAAGTGAGATCGATCATATGGCCCTTATCAAAATCAAAGAATCAATATTGAGTGACCCAAATGGGATCTTGTTTTCTTGGAATACTTCTACTCACTTCTGTAATTGGTATGGAATCACATGCAATCCCACACTTCGAAGGGTTACTGAGCTGAATTTGCAAGGGCACAGGTTGAAAGGGTATATTTCTCCTCACATAGGTAATCTCTCTTACATGAGAACATTTGAACTTGGGAACAACAGTTTCTATGGCAATATCCCACTAGAAGTGGGGAGATTGTCCCAATTGCAGAAATTCAGAGTTGAAAATAACACATTGGTCGGAGAAATTCCTTTGAATTTGACGCATTGTACTCAGCTCAAAAGTTTATATTTGTATGGAAACAATCTGAAAGGAAAAATACCTACTCAAATCGGATTGCTCCGGAACATTCAGTTTTTGAACTTTGGTCAAAACCAGTTAACAGGAGAAATTCCATCTTCCATTGGGAATCTTTCTTCAATAACATATCTATCACTTGGTTTTAACAATTTAGAGGGAGATATTCCACAAGAAATATGCTATCTCAAGAGCTTGATGATTGTAGCTTTAGGTATTAACAAACTGAGTGGATCATTTCCCTCCTGTCTTTATAATATGTCATCTCTTACTGCAATCGGAGTTGAAGAAAATCAATTTCGCAACTCTCTTCCACCCAACATGTTCCACACCCTCCAGAATCTCCATGTACTTTTTCTTGCTAACAACCAATTTTCAGGTCCAATCCCACCTTCCATTGAAAATGCATCCAGCCTTTCATTCCTTGATCTCTCTAGAAACCATTTTGTGGGAAGAATTCCAAGTCTTGGAAAACTACACGATCTTTATTACCTAAGTTTGGCTCAAAACAATTTAGGTTACAATTCAACTAATGATTTGGAGTTTTTAAAATCATTGGTAAATTGTACTAAGTTGGAAATGTTAGCTCTATCTTACAATAGTTTTGGAGGTCAATTGTCAAATTCTTTGGGAAATTTGTCGATCCGACTAAGTCAACTATATCTCGGATACAATGAGATATCTGGAGAAATCCCTGAGGCAATAGGAAATTTAATTGGCTTAACTATCTTAACAATATACAATAACCAAATTGATGGGAATATCCCAACAACTTTTGGAAAGTTTAAAATGCTTCGAGTGTTAGAATTAAAGGAAAACAAGTTGTCAGGAAAAATAGAACCCTTCATTGGAAACTTAAGTCAATTGTTTAATTTGAAACTACGAGCAAATCGATTTGAAGGGAGTATTCCTCCAAGTATGGGAAATTGTCAACTGCTAGATCTTTCAGAGAACAATCTCACAGGCACCATACCACTAGAGCTTTTCAATCTTACCTCTCTATTCATATTGGATTTGTCAAGTAACTCATTGAGTGGTAGTATACCAGATGAAGTGGGAAATATACGCAATATTAACTTTCTAGATATGTCAAACAATCATATATCCGGTCACATTCCTCTTGGTGTTGGAAAATGCGTAATGTTAGAGTACCTCTATTTGCAAGGGAATTCTTTACAAGGAATCATACCATCTTCTTTGGCATCACTTAAAAGCATTATATTTTTGGACCTGTCACAAAACCATTTCTCTGGATCAATTCCAAATTTCCTGCAAAACCTTTCTTTCTTACAGTATTTGAATGTATCTTTTAACATATTGGAAGGTGAGGTACCCACTGAAGGTGTCTTTCGAAATGTAAGTGCATTGGTGGTGAGTGGAAACAGTAAGCTTTGTGGAGGTATTTCTGAATTGCATCTGCCACCGTGCCCTCTTAAAATTAAGAAACGTGCAAAACACCGCAAGTTCAGATTGATAGTAATGATATTAAGTGTAGTTGTTTTCCTCATTGTACTATTATCTGCCTTAACTATCTATTGTTCGAGGAAAAAGGGAAAGAAACCTGTCCTCAATTCATCAACAATTCACCAATTGGCTAAAGTTTCCTACCAAAGCTTGTACAATGGAACTGATGGGTTCTCAGAGACAAACTTGATAGGGAGTGGGAATTTCAGTTCTGTCTACAAAGGAACTCTTGAGCTCGAAGACAGAGTTGTTGCCGTAAAGGTTCTAAACCTGCAAAGAAAAGGAGCTCACAAGAGCTTCGTGGCAGAATGTAATGCACTAAAAAATATCAAGCATCGAAATCTTGTTCAGATTTTGACATGTTGTTCCAGCACAGATTATAAAGGTCAAGAATTCAAAGCTTTGATCTTTGAGTACATG 2352 0.3639 MKPFSMMFSFIYVHLLFYFTSNSKHNVFASESEIDHMALIKIKESILSDPNGILFSWNTSTHFCNWYGITCNPTLRRVTELNLQGHRLKGYISPHIGNLSYMRTFELGNNSFYGNIPLEVGRLSQLQKFRVENNTLVGEIPLNLTHCTQLKSLYLYGNNLKGKIPTQIGLLRNIQFLNFGQNQLTGEIPSSIGNLSSITYLSLGFNNLEGDIPQEICYLKSLMIVALGINKLSGSFPSCLYNMSSLTAIGVEENQFRNSLPPNMFHTLQNLHVLFLANNQFSGPIPPSIENASSLSFLDLSRNHFVGRIPSLGKLHDLYYLSLAQNNLGYNSTNDLEFLKSLVNCTKLEMLALSYNSFGGQLSNSLGNLSIRLSQLYLGYNEISGEIPEAIGNLIGLTILTIYNNQIDGNIPTTFGKFKMLRVLELKENKLSGKIEPFIGNLSQLFNLKLRANRFEGSIPPSMGNCQLLDLSENNLTGTIPLELFNLTSLFILDLSSNSLSGSIPDEVGNIRNINFLDMSNNHISGHIPLGVGKCVMLEYLYLQGNSLQGIIPSSLASLKSIIFLDLSQNHFSGSIPNFLQNLSFLQYLNVSFNILEGEVPTEGVFRNVSALVVSGNSKLCGGISELHLPPCPLKIKKRAKHRKFRLIVMILSVVVFLIVLLSALTIYCSRKKGKKPVLNSSTIHQLAKVSYQSLYNGTDGFSETNLIGSGNFSSVYKGTLELEDRVVAVKVLNLQRKGAHKSFVAECNALKNIKHRNLVQILTCCSSTDYKGQEFKALIFEYM 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7213g00001 784 SUPERFAMILY L domain-like 342 622 - -
Vium7213g00001 784 ProSiteProfiles Protein kinase domain profile. 702 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7213g00001 784 Pfam Leucine rich repeat N-terminal domain 38 72 IPR013210 -
Vium7213g00001 784 Pfam Leucine rich repeat 538 594 IPR001611 GO:0005515
Vium7213g00001 784 SUPERFAMILY L domain-like 35 328 - -
Vium7213g00001 784 FunFam LRR receptor-like serine/threonine-protein kinase EFR 337 638 - -
Vium7213g00001 784 Pfam Protein kinase domain 703 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7213g00001 784 Gene3D Phosphorylase Kinase; domain 1 682 783 - -
Vium7213g00001 784 SUPERFAMILY Protein kinase-like (PK-like) 677 784 IPR011009 -
Vium7213g00001 784 FunFam LRR receptor-like serine/threonine-protein kinase EFR 673 783 - -
Vium7213g00001 784 ProSitePatterns Protein kinases ATP-binding region signature. 708 731 IPR017441 GO:0005524
Vium7213g00001 784 Gene3D Ribonuclease Inhibitor 92 332 IPR032675 -
Vium7213g00001 784 Gene3D Ribonuclease Inhibitor 27 91 IPR032675 -
Vium7213g00001 784 Gene3D Ribonuclease Inhibitor 333 640 IPR032675 -
Vium7213g00001 784 PANTHER OS04G0122200 PROTEIN 219 784 - -
Vium7213g00001 784 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 73 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7213g00001 Vium-Chr7213 4909 7260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7213g00001 32 784 Receptor kinase-like Gene Family AT3G47570 44.110 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vium7213g00001 Pkinase 1.7e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7213g00001 - - vun:114166412 1270.76