Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7210g00002 ATGTTTTGTTCTGTCCTTTTAACTAGACCTGTCAATTTGGCCCTTCTTACATGGTTTGGCCCTAACCCACTTGGGTTGTGGACAGAAAAATCCACAGGGCCAAAAAGTTTCTCTGGNNGAAGCTTAGACTCCCACCTTTATGGAGTGAAAAGCTTCTTAACTTGGAGAGTGAGGTATAATATAGCTTTGGACTTGGCTTCAGCATTGCTTTACCTACAAGAAGAGTGGGAGCAGTGTGTGATTCACAGAGATATTAAATCAAGCAACATTATGTTGGATTCAAGTTTCAATGCTAAGCTTGGTGATTTTGGTTTGGCTAGGCTGGTGGACCATGAGAAAGGGTCACAAACCACACATATAGCAGGGACCAGGGGCTATATTGCACCTGAATATTTCAGTTCAGGAAAGGCTACTAAGGAATCTGATATTTACAGCTTTGGGGTTGTGTTGTTGGAGATAGCTTGTGGAAGAAAATGTGTTGAGCTAAAAGCTGAGGAGGGTGAAATAACTTTAGTTGAGTGGGTTTGGAAGCTCTATGGATTGGGGAGGTCACTTGAAGCAGTTGACCCAAAGTTACGTGGAGAATTTGATGAGAAACAAATGATCGGTTTAGTGGTTGTTGGCCTTTGGTGTGTTCATCCAGATTACTCATTCAGGCCCTCTATAAGGCAAGTGATTCAGGTCCTTAAATTTGATTCTCCTTTACCTCTTCTCCCAGAAATGATGCCTGTGCCAACATATCTTCCTCCAACAATAAAAGCACTTTTTTCTTCAGTTTCTTCTTTCTTTTGGGAAACAAGTTAG 804 0.4154 MFCSVLLTRPVNLALLTWFGPNPLGLWTEKSTGPKSFSGXSLDSHLYGVKSFLTWRVRYNIALDLASALLYLQEEWEQCVIHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTHIAGTRGYIAPEYFSSGKATKESDIYSFGVVLLEIACGRKCVELKAEEGEITLVEWVWKLYGLGRSLEAVDPKLRGEFDEKQMIGLVVVGLWCVHPDYSFRPSIRQVIQVLKFDSPLPLLPEMMPVPTYLPPTIKALFSSVSSFFWETS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7210g00002 267 ProSitePatterns Serine/Threonine protein kinases active-site signature. 80 92 IPR008271 GO:0004672|GO:0006468
Vium7210g00002 267 Pfam Protein kinase domain 41 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7210g00002 267 PANTHER - 40 232 - -
Vium7210g00002 267 SMART serkin_6 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7210g00002 267 SUPERFAMILY Protein kinase-like (PK-like) 38 255 IPR011009 -
Vium7210g00002 267 ProSiteProfiles Protein kinase domain profile. 1 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7210g00002 267 FunFam Lectin-domain containing receptor kinase A4.3 37 249 - -
Vium7210g00002 267 Gene3D Transferase(Phosphotransferase) domain 1 38 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7210g00002 Vium-Chr7210 41976 44267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7210g00002 41 247 Receptor kinase-like Gene Family AT5G10530 64.286 1.19e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium7210g00002 Pkinase 6.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7210g00002 - - vum:124844897 535.028