Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium720g00001 ATGGGGGAATCCAATGTTGTTAGCAAGAATAGCCTCTATACTACTTGTCCTAAAAAATGTGATGAAGATGCTCGTGTATCTGCAATGCTGCTTAGTACTGCTGTGGTGTATCCTGCAGTTATGAATGCTGCTATTGAGCTCAACTTGTTTGAGATCATAGCCAAGGCAACACCACATGGTTCACTCATGTCATCTCATGAAATTGCTTCTAAGCTCCCAAACCAGCACCCTGACTTGCCCAATAGGCTTGATCGCATGCTGCGTTTGCTTGCTAGTTATTCTGTTCTTACCACTTCAACACGCACCACACAACACGGTGCCACCGAGACAGTTTACGGACTCTCACAAATTGGACAATACTATGCCCCTGAGGCAACTAGAGGCTACTTCGCTTCATTTGCATCCTATCTCTCTTGTCCTGCGCTCTCACCACTTTGGTCGAATTTCAAGGAAGCAGTGGTTGATGCAGACGTTGATTTGTTCAAGAAACTTCATGGGGTAACAACGTACCAGTACATGGAAAAGAATCCCAAAATGAACGAAATTTTTAACGCGTCTATGGCGGATTTGTGCGTAACGGATATGAATAGAATACTTGACATATATAATGGATTTGAGGGAATATCAACTTTGGTCGATGTAGGAGGTGGAAATGGACAAAACCTGAAAATGATAGTCTCCAAATACCCTTCAATTCAAGGAATTAATTTTGATCTGCACCAAGTCATTGAGAATGCACCACTGCTATCAGGGGTTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCAGAAGGTGACGCCATGACACTAAAGGCTGTCTTGCACAATTGGTCTGACGAGAAGTGCGTAGAAATATTGAGCAATTGTCACAAAGCACTGTCTGGAGATGGGAAGGTGGTTGTTCTGGAATTCATAATGCCAGAAGAACCAGAAGCAACTGAACAATCTCAGCTCGTTTCGAGCCTGGACAACCTTATGTTTATCACAGCAGGTGGAAAGGAAAGAACTGAGAAAGAGTACGAGAATTTGTGCAAGCTGGCTGGTTTTTCAAAATTTAATGTTGCTTGTCATGCGTCGTCTGGGCCGGGAGTGATGGAATTCTACAAATAG 1113 0.434 MGESNVVSKNSLYTTCPKKCDEDARVSAMLLSTAVVYPAVMNAAIELNLFEIIAKATPHGSLMSSHEIASKLPNQHPDLPNRLDRMLRLLASYSVLTTSTRTTQHGATETVYGLSQIGQYYAPEATRGYFASFASYLSCPALSPLWSNFKEAVVDADVDLFKKLHGVTTYQYMEKNPKMNEIFNASMADLCVTDMNRILDIYNGFEGISTLVDVGGGNGQNLKMIVSKYPSIQGINFDLHQVIENAPLLSGVEHVGGDMFASVPEGDAMTLKAVLHNWSDEKCVEILSNCHKALSGDGKVVVLEFIMPEEPEATEQSQLVSSLDNLMFITAGGKERTEKEYENLCKLAGFSKFNVACHASSGPGVMEFYK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium720g00001 370 Pfam O-methyltransferase domain 146 351 IPR001077 GO:0008171
Vium720g00001 370 SUPERFAMILY "Winged helix" DNA-binding domain 21 121 IPR036390 -
Vium720g00001 370 FunFam Caffeic acid 3-O-methyltransferase 8 121 - -
Vium720g00001 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 137 358 IPR029063 -
Vium720g00001 370 PANTHER O-METHYLTRANSFERASE 28 368 IPR016461 GO:0008168
Vium720g00001 370 Gene3D - 5 121 IPR036388 -
Vium720g00001 370 Gene3D Vaccinia Virus protein VP39 124 370 IPR029063 -
Vium720g00001 370 PIRSF O-mtase 7 370 IPR016461 GO:0008168
Vium720g00001 370 Pfam Dimerisation domain 40 91 IPR012967 GO:0046983
Vium720g00001 370 FunFam Caffeic acid O-methyltransferase 124 370 - -
Vium720g00001 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 370 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium720g00001 Vium-Chr720 2657 4406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium720g00001 21 359 Monolignol Biosynthesis Gene Families AT5G54160 45.882 4.92e-104 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium720g00001 - - gmx:100787536 573.548