Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7204g00002 ATGATGGCTTCCGTAGAAGAAAAGCTTAAAACTGGAGGAGTTGGAGTTGGAGTTGGAGCTGGAGCTGGAGGAGGAATGGTTGTTGGGAGTCAAACTTTAATGGCTGAGATGAAACTGTTGAAAGAAATGCAGGAACATTCTGGGGTCAGAAAGACTTTGAATTCCGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTTTCATTACCTCAGGTTGGAAGTCTTGTGTTTTACTTCCCTCAGGGACACAGTGAGCAGGTGGCGGCTTCTACCAGAAGGACAGCAACGTCGCAGATTCCAAACTACCCCAATCTTCCATCTCAGTTGCTGTGTCAAGTCCAAAATGTCACACTTCATGCAGACAAAGAGACAGATGAAATCTACGCTCAAATGAGTCTCCAGCCACTGAATTCTGAAAAAGAAGCATTTCCCATATCTGATTTTGGTCTAAAGCCAAGCAAACACCCCACTGAGTTCTTCTGCAAAACTTTGACTGCCAGTGACACGAGCACACACGGCGGCTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTCTTTCCTCCGTTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATCTACAGGGGTCAACCAAAGAGACACCTTCTCACAACAGGGTGGAGTTTGTTCGTAGGCTCAAAAAGACTCAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAAATCGCAACTGCGAGTTGGTGTGAGGCGTGTTAATCGTCAACAAACAACACTGCCATCATCAGTGCTTTCTGCAGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCCGCTGCTAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCTTGCCCTTCAGAATTTGTTATTCCGCTGGCTAAATACAGAAAAGCTGTATTAGGGACTCAGGTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACTGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGCATCAGTGATGTGGATCCTCTGAGGTGGCCTGATTCTAGATGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAACAGAATAGAGTTAGTGTTTGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAAGTCTGAAACGGCCATTGCAATCTGGATTTTATGAAAATGAGTGGGGGACTTTGTTAAGAAGACCTTTTATGAGAGTTCCAGAAAATGGAACTATGGAGCTACCAAACTCAATGCCAAATCTCTACTCAGAACACCTGATGAAAATGCTTTTCAAACCCCAGATAATTAACAACAATGGAGCATTGTTATCGGCCATGCAACAAGAATCTGCTGCTGCAAGAGGTCCCTTGCAAGAGATGAAGACCACACTTGCAGCAGATAGCATGCCGCTTAGAAATCTACACACTCAATCTATCCCTGAACAACCTATTCCCCTAAACATGCAATCACTGTTGAAAAGTGATCAACCTGAAAAGTTGCACACTCTTGCCAAAATTGAGCTGCCTTCTGGGATAGTCGCTGACAAGCCAAAATTAGAACCTGAGGTATTACCACCTGATCATATGCTTGACTATGCTTCCACTTCCATGGAAGGGTGCAACATGGAAAAAGTACCAACAAATCCTGTTAACCAGCAAGGCCTAGCAAACCAATTGACTTTCCATAATCAAAACCAGACTCCTCTCACTCAATCTACTCCATGGCCTATGCAAGCTCAGATAGAATCATCCTTGCCCCATCCTCAAATGATTGACATGGCTCAAGCTGAAACTGCTATGGTAAATAGCCTGCTTCCTCAGCTAGACATTGATGAATGGATGGCGTATGCTTCCTCCCAACCTTTTGCCACGCCAAACAGACCAACTGGACCATTACCTGAGTTGCAAGAACATACGACACTTCAACCTCAAGTGGTGAATCCCCCTTTACCTAACCATGAAGTGTGGGATCATTATGTCAAGAGTTTGAAGTTTTTGTCTCAAACAGACCAGCTAGCCTCCATCTGTCAGCCAGGGACGTTCAATGGCATCAATGGCTTGCCAAGTCCAAACAGTCTGAGGGGCCTTTCAGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAACGTTGATGTCAGTAACAGCGTAGGTACCACCGTGGTTGATCCTTCTACTTCAAGCACCATTTTGGACGAGTTTTGCACAATGAAGGAGAGAGAGTTTCAGAATCCAAATGATTGCATGATGGGCAACTTGAGTTCAAGCCAGGATGTGCAATCTCAAATAACCTCGGCAAGTCTGACTGAGTCACACGCCTTTTCTTTCAGAGACATCCCTGACAACTCAGGTGGCACTTCTTCAAGCCATGTTGATTTTGATGAAAACAGCTTTCTGCAGAATAACTCGTGGCAGCAAGTACCTGCTCCCATCCGAACCTACACAAAGGTACAAAAGGCCGGTTCTGTCGGAAGATCAATTGATGTCACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTTGATGGTCTTCTGAATGACACTAAAGGTTCTGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTGCTAGTTGGGGATGATCCTTGGGAGGAATTTGTGGGGTGTGTTCGCTGCATCAGAATTTTATCCCCTACAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTAAACAGTGGAGCTTTACAAGGGATGAATGTTTGA 2820 0.4475 MMASVEEKLKTGGVGVGVGAGAGGGMVVGSQTLMAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEKEAFPISDFGLKPSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVLGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPDSRWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGFYENEWGTLLRRPFMRVPENGTMELPNSMPNLYSEHLMKMLFKPQIINNNGALLSAMQQESAAARGPLQEMKTTLAADSMPLRNLHTQSIPEQPIPLNMQSLLKSDQPEKLHTLAKIELPSGIVADKPKLEPEVLPPDHMLDYASTSMEGCNMEKVPTNPVNQQGLANQLTFHNQNQTPLTQSTPWPMQAQIESSLPHPQMIDMAQAETAMVNSLLPQLDIDEWMAYASSQPFATPNRPTGPLPELQEHTTLQPQVVNPPLPNHEVWDHYVKSLKFLSQTDQLASICQPGTFNGINGLPSPNSLRGLSAESNNQSEICVNVDVSNSVGTTVVDPSTSSTILDEFCTMKEREFQNPNDCMMGNLSSSQDVQSQITSASLTESHAFSFRDIPDNSGGTSSSHVDFDENSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSGALQGMNV 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7204g00002 939 Gene3D - 156 260 IPR015300 -
Vium7204g00002 939 SMART B3_2 159 261 IPR003340 GO:0003677
Vium7204g00002 939 FunFam Auxin response factor 323 395 - -
Vium7204g00002 939 Pfam AUX/IAA family 830 919 IPR033389 -
Vium7204g00002 939 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 923 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium7204g00002 939 Pfam Auxin response factor 285 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium7204g00002 939 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Vium7204g00002 939 SUPERFAMILY CAD & PB1 domains 835 912 - -
Vium7204g00002 939 Gene3D - 323 395 - -
Vium7204g00002 939 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
Vium7204g00002 939 Gene3D - 830 922 - -
Vium7204g00002 939 ProSiteProfiles PB1 domain profile. 833 917 IPR000270 GO:0005515
Vium7204g00002 939 FunFam Auxin response factor 829 922 - -
Vium7204g00002 939 SUPERFAMILY DNA-binding pseudobarrel domain 147 288 IPR015300 -
Vium7204g00002 939 CDD B3_DNA 158 259 IPR003340 GO:0003677
Vium7204g00002 939 FunFam Auxin response factor 157 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7204g00002 Vium-Chr7204 73128 78351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7204g00002 32 937 B3 DNA Binding Superfamily AT1G19850 58.761 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium7204g00002 AUX_IAA 3.1e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7204g00002 K14486 - gmx:100790289 1660.2