Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7203g00010 ATGGAAGAGGTTGAGCAAGCTAATAGAGCAGCTGTTGAAAGCTGTCATAGGGTTCTGAGTTTGTTGTCTCAACCAAGGGATCAGGTTCAGCATAGGAATTTAGTGGTGGAAACTGGAGATGCTGTGGTAAAGTTCAAGAAGGTTGTGTCCTTGCTTAAGAGTGGTTTGGGTCATGCAAGAGTGAGGAAGGTTAAAAACCCTCAAGTTCCCTTTACCCACCAAAGTATCTTCTTAGACAACCCAAATTGCAAAACCAACAACCATCACTCAAAAAATCTGCAGCTTTTCCAACCCAGCTTTCCTGACAATTCAATTGTGGAACTGGGTTCAACCATTAAACATTCACTCTCTCTAGCACAGCCCTCTTTGGAATTGAGCTCCAGTGGGAAAAGTGCTCTTCACCTCACTCAGCAGGCTTCATCAACTCACTATCACTTCTTTCAGCAACAGCAACAGCAAAGGGTGTTGCTCCAGCAGCAACAGCAGCAGCAACAACAGCAGCAACATTTGAAGCATCAAGCAGAAATGATGTTCCGAAGGAGCAATAGTGGCATAAACCTGAATTTTGACAGTACTAGCTGCACACCAACAATGTCATCTAATAGGTCTTTTATTTCTTCCTTGAGCATAGACGGAAGTGTGGCTAACTTGGATGGAAGTGCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAGAATTCGCAACAGCACAAGAGAAAATGTTCTGCAAGAGGCGATGAAGGAAGCTTGAAATGTGGGAGTAGTTCTAGATGTCATTGCTCTAAGAAGAGGAAACATAGATTGAAAAGGTCAATCAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATTCCCCCTGATGATTATTCATGGAGAAAGTATGGCCAAAAGCCCATCAAGGGCTCCCCTCACCCTAGGGGATACTATAAATGCAGCAGCATGAGAGGGTGTCCTGCTAGAAAGCATGTTGAGAGGTGCTTGGAAGAGCCGACCATGCTAATTGTCACCTATGAAGGCGAACATAACCACCCTAAGTTACCAACGCAATCTACAAATGCATGA 1065 0.4423 MEEVEQANRAAVESCHRVLSLLSQPRDQVQHRNLVVETGDAVVKFKKVVSLLKSGLGHARVRKVKNPQVPFTHQSIFLDNPNCKTNNHHSKNLQLFQPSFPDNSIVELGSTIKHSLSLAQPSLELSSSGKSALHLTQQASSTHYHFFQQQQQQRVLLQQQQQQQQQQQHLKHQAEMMFRRSNSGINLNFDSTSCTPTMSSNRSFISSLSIDGSVANLDGSAFHLIGAPHSSDQNSQQHKRKCSARGDEGSLKCGSSSRCHCSKKRKHRLKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSTNA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7203g00010 354 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 353 IPR044810 GO:0003700
Vium7203g00010 354 MobiDBLite consensus disorder prediction 227 256 - -
Vium7203g00010 354 Coils Coil 147 167 - -
Vium7203g00010 354 Gene3D WRKY domain 271 348 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium7203g00010 354 Pfam WRKY DNA -binding domain 288 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium7203g00010 354 Pfam Plant zinc cluster domain 239 284 IPR018872 -
Vium7203g00010 354 SUPERFAMILY WRKY DNA-binding domain 284 346 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium7203g00010 354 ProSiteProfiles WRKY domain profile. 281 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium7203g00010 354 SMART WRKY_cls 286 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium7203g00010 354 FunFam WRKY transcription factor 65 270 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7203g00010 Vium-Chr7203 142566 145165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7203g00010 1 351 WRKY Transcription Factor Family AT2G30590 57.441 8.43e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium7203g00010 WRKY 5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7203g00010 - - gmx:100170681 592.038