Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7203g00003 ATGGAGAATTCATTGGGAAGCTACGAAAAAGAGCTTAATCTGAAGGCCACTGAGCTGAGACTGGGGTTGCCCGGTAGCGATGAGCCTGAGAAACTTGCTACTGCTAGAAGCAACAAGAGATCTTCGCCGGAAGCAAGTGACAATGGTTCTGATGTCACAAAAGAAGACAACGTTGTACCACCTGCAAAGGCACAAGTAGTGGGGTGGCCACCGATTCGATCTTACAGGAAGAATAACGTACAGCAGAAGAAAGAAGAAGAAAGTGAAGGAAATGGGATGTACGTGAAAGTTAGCATGGCGGGTGCACCTTATTTGAGGAAGATAGATCTCAAGGTTTACAAAAGCTACCCTGAACTTCTCAAGGCCTTGGAAAATATGTTCAAGTGCATATTCGGAGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTCGTGTCATCCTGCAAGAGGCTCAGAATCATGAAGGGATCAGAAGCAAAGGGGTTGTTGGGTTGTTTTTGA 570 0.4491 MENSLGSYEKELNLKATELRLGLPGSDEPEKLATARSNKRSSPEASDNGSDVTKEDNVVPPAKAQVVGWPPIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGLLGCF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7203g00003 189 MobiDBLite consensus disorder prediction 18 63 - -
Vium7203g00003 189 Pfam AUX/IAA family 44 185 IPR033389 -
Vium7203g00003 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 183 IPR003311 GO:0005634|GO:0006355
Vium7203g00003 189 SUPERFAMILY CAD & PB1 domains 87 178 - -
Vium7203g00003 189 ProSiteProfiles PB1 domain profile. 92 179 IPR000270 GO:0005515
Vium7203g00003 189 Gene3D - 86 188 - -
Vium7203g00003 189 FunFam Auxin-responsive protein 87 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7203g00003 Vium-Chr7203 71060 72357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7203g00003 83 185 B3 DNA Binding Superfamily AT2G46530 37.864 7.28e-14 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vium7203g00003 AUX_IAA 4.8e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7203g00003 K14484 - gmx:100780752 332.413