Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7203g00002 ATGGAAGCTGGTCTCATGAAGGAGAAGATGGTGTTTGAGGAAACTGAACTCAGGCTGGGACTTGGACTTGGACTACCTGGAAATGGAGGCACAGCAACCGAAGCAGCAGTAGCAGCAGAAGGAGTGAGGAAGAGAGGCTTCTCTGAAACTCAGACTGAAACAACCACCGTTGATTTGAAGCTTAACCTCTCCCCAAAGGAACTTTCTTCTGCTGATGGAACAGATCCACGTAATAAGCCAAACACTTCGCCTAAGGAGAAAACCCTTTTGCTTCCCGACCCCGCCAAACCTCCTGCTAAGGAGCAAGTTGTGGGATGGCCACCAGTGAGGTCATTCAGGAAGAACATGTTTGCAGCACAAAAGAACATGGGAGAGGAAAGTGAGAAGAACAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTATCTCCGGAAAGTGGACTTGAAGATGTACAAGAGTTACCCAGAACTCTCTGATGCCTTGGGAAAAATGTTTAGCTCCTTCACCATTGGGAATTGTGAATCCCAAGGCTTTAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCCGACTGTGTCCCAACCTATGAAGACAGGGATGGTGACTGGATGCTTGTCGGTGATGTTCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGGAAGGAAGCCATTGGACTGGCACCAAGAGCCATGGAGAAATGCAAGAACAGGAGCTAG 759 0.473 MEAGLMKEKMVFEETELRLGLGLGLPGNGGTATEAAVAAEGVRKRGFSETQTETTTVDLKLNLSPKELSSADGTDPRNKPNTSPKEKTLLLPDPAKPPAKEQVVGWPPVRSFRKNMFAAQKNMGEESEKNSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDCVPTYEDRDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7203g00002 252 ProSiteProfiles PB1 domain profile. 134 234 IPR000270 GO:0005515
Vium7203g00002 252 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 239 IPR003311 GO:0005634|GO:0006355
Vium7203g00002 252 Pfam AUX/IAA family 15 243 IPR033389 -
Vium7203g00002 252 MobiDBLite consensus disorder prediction 39 103 - -
Vium7203g00002 252 Gene3D - 128 246 - -
Vium7203g00002 252 FunFam Auxin-responsive protein 129 244 - -
Vium7203g00002 252 SUPERFAMILY CAD & PB1 domains 128 233 - -
Vium7203g00002 252 MobiDBLite consensus disorder prediction 48 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7203g00002 Vium-Chr7203 29097 31604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7203g00002 126 237 B3 DNA Binding Superfamily AT3G61830 33.929 5.92e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium7203g00002 AUX_IAA 7.5e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7203g00002 K14484 - gmx:100780214 398.667