Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7200g00016 ATGTCTTCCCTTGCTTTGTTTTTTCTTGTCCTTAATTTGGTTCTTCAAGTTTTGATTTCTGTGTCCGCAAATGAATTTGTCTACAATAGGAACTTCAACTCCTCTAACGTGAAACTCTATGGGAATGCCACCATCCAGAACTCAATTCTCACGCTCACAAACAAAACTTTCTTCTCCATAGGACGTGCCTTTTACCCTCAGAAAATAAAAACGAAGCCATCCAACTCTTCCACTGTTCTTCCCTTTGCAACTTCCTTCATCTTCTCTGTTGCCCCTTGTGAGAACTTCCCTGTTGCTCATGGTTTTGCTTTTATTTTCGCGCCGGTGATGGCCGTAAATGGAGCTCTATCGGGGAACTACTTGGGCTTGTTTAACCGCTCTACTTCAGGTAACTCCTCCAACCATGTTTTTGCGGTTGAGTTTGATGATTTTAGGAACGAGGAGTTCAATGAGGAGAATGATAATCATGTGGGCGTGGACTTGAATTCGATTATTTCGGAGTATTCTGAGCCTGCTGGGTTCTGGGGTGGGAGAGAGGGCGAGGAATGGGAGGATTTGAAACTAGCTGATGGTAGAAATTATCAGGTTTGGATTGAGTTTGAGGATTCGGTGATTAATGTTACTATGGCACCGGCAGGGAAAAAGAAGCCTCGGAGGCCTTTGATCAGTAAACCGATTAACCTTTCTTGGGTCTTGTTGGATGAAATGTATATGGGGTTTTCTGGAGCAACAGGGAGAATGGTGGACTATTGTAGAATCTTAGCTTGGAGTTTTAGCAATTCCAACTTTTCAATTGGTGATGCTTTGAACACCAAGCATTTACCAGTGTATGTGCATCCAAAAAATTCGCTGTTTAGATCAAATGGTTTCATTATAGGTGTAACTTTCGGGGCGTTTTTTATGGGAGGTTTCTGTGCTTTGGTGTTTTTTTATAGTTTGTTCAAAATCAGAAGGGAAGAGAAACAGGAAAATTTTGAAGACTGGGAATTGGAGTATTGGCCACACAGGATTAGCTATCAGGAGATCTGTGATGCAACAAGTGGATTCTCCGAAGAGAAAGTGATTGGGATTGGAACGAGTGGGAAAGTATACAAGGGAGTTTTGAAGGGAGTAGTAGTTGCAGTGAAGAGCATCAATCACGAGACACAGTATGGAATGAGAGAGTTTCTGGCAGAGATTTCAAGTCTTGGCAGAATGAAGCACAGGAATTTAGTGGGTTTCAGAGGTTGGAGCAAAAGAAAAGGAGGAAAACTTATACTGGTTTATGATTACATGGAGAATGAGAGCTTGGACAAAAGGATCTTTGAGTGTGAAGAGGCAATGCTGCTGAGCTGGGAAGAAAGAATTAGAGTTTTGCAAAATGTAGCTGATGGGATTTTATACCTACACGAGGGTTGGGAAGTTGAGGTCTTGCATAGGGACATCAAAGCTTGTAATGTACTACTTGACAAGGACATGAATGCTAGATTGGGGGATTTTGGGCTTGCAAGGCTGCATCGCCAGGAACATGTGGCTGACACAACAAGAGTGATAGGGACTCTGGGGTACATGGCACCGGAACTAGTTCGAATTGGGAGACCCACAGCTGCGTGTGATGTGTTCAGCTTTGGAGTATTGGTTCTAGAAGTGGTGTGTGGGAGAAGACCCGTCATAGCAGATCAGCCACCATTGTTTGATTGGGTATTTTCCCTTATGGAGAAAGGGGAGTTGAGTTGTGCTATTGATGAGCGTTTGAAGGGTCAAATTGGTTATAATGCTGAAGAAGCTGAGAGGATGCTTCATTTGGGTTTGTTATGTGTAGGTAATGACCCTGTTGCTAGGCCAACAATGAGGCAAGTGGTGAAAACATTGGAGGGAATAAAATGCACTGAATGCAATGACGAGTGCATCCATTTGGGTCTGCTTGGAAAAATAAACTCAGCAGCATCATGGTCTAAAAGTTCTACAAGTTCTTCCTATGTAAATTATCCTACCTTTGATGAGATTTTGCAGACCAAGTTTTATTCTACTGCATCTTTAAGCATCTCTTATCCCAGCCCACAGCCACAGTCAGAGTTTGTCTCAGAAGGAAGTCTTACAAAGCACACCCAAATATACCATCTAGGACCAAGCACATCCAAGTATCTCATATATGCAGGACAAATATTTAAGACCAGGCACACCCAAGTATCTCGTGTATGCAGGTCAAATATCCAAGACCAAGCACACCATGTATCTCATGCGTGTAAGACAAATATCTAA 2241 0.4261 MSSLALFFLVLNLVLQVLISVSANEFVYNRNFNSSNVKLYGNATIQNSILTLTNKTFFSIGRAFYPQKIKTKPSNSSTVLPFATSFIFSVAPCENFPVAHGFAFIFAPVMAVNGALSGNYLGLFNRSTSGNSSNHVFAVEFDDFRNEEFNEENDNHVGVDLNSIISEYSEPAGFWGGREGEEWEDLKLADGRNYQVWIEFEDSVINVTMAPAGKKKPRRPLISKPINLSWVLLDEMYMGFSGATGRMVDYCRILAWSFSNSNFSIGDALNTKHLPVYVHPKNSLFRSNGFIIGVTFGAFFMGGFCALVFFYSLFKIRREEKQENFEDWELEYWPHRISYQEICDATSGFSEEKVIGIGTSGKVYKGVLKGVVVAVKSINHETQYGMREFLAEISSLGRMKHRNLVGFRGWSKRKGGKLILVYDYMENESLDKRIFECEEAMLLSWEERIRVLQNVADGILYLHEGWEVEVLHRDIKACNVLLDKDMNARLGDFGLARLHRQEHVADTTRVIGTLGYMAPELVRIGRPTAACDVFSFGVLVLEVVCGRRPVIADQPPLFDWVFSLMEKGELSCAIDERLKGQIGYNAEEAERMLHLGLLCVGNDPVARPTMRQVVKTLEGIKCTECNDECIHLGLLGKINSAASWSKSSTSSSYVNYPTFDEILQTKFYSTASLSISYPSPQPQSEFVSEGSLTKHTQIYHLGPSTSKYLIYAGQIFKTRHTQVSRVCRSNIQDQAHHVSHACKTNI 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7200g00016 746 CDD lectin_legume_LecRK_Arcelin_ConA 25 261 IPR001220 GO:0030246
Vium7200g00016 746 FunFam L-type lectin-domain containing receptor kinase S.4 22 266 - -
Vium7200g00016 746 Pfam Protein kinase domain 350 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7200g00016 746 Pfam Legume lectin domain 24 262 IPR001220 GO:0030246
Vium7200g00016 746 FunFam L-type lectin-domain containing receptor kinase S.4 425 628 - -
Vium7200g00016 746 Gene3D Transferase(Phosphotransferase) domain 1 425 631 - -
Vium7200g00016 746 PANTHER - 41 621 - -
Vium7200g00016 746 ProSiteProfiles Protein kinase domain profile. 349 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7200g00016 746 SMART serkin_6 349 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7200g00016 746 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 264 IPR013320 -
Vium7200g00016 746 Gene3D - 23 266 - -
Vium7200g00016 746 SUPERFAMILY Protein kinase-like (PK-like) 323 618 IPR011009 -
Vium7200g00016 746 Gene3D Phosphorylase Kinase; domain 1 312 424 - -
Vium7200g00016 746 ProSitePatterns Protein kinases ATP-binding region signature. 355 376 IPR017441 GO:0005524
Vium7200g00016 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Vium7200g00016 746 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 312 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7200g00016 Vium-Chr7200 144348 149035 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7200g00016 21 571 Receptor kinase-like Gene Family AT4G04960 55.396 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium7200g00016 Pkinase 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7200g00016 - - vum:124844866 1439.86