Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7200g00014 ATGGGAAGTTTAGACAAAAGGATATTTGAGTGTGAAGAGAGAATGGTGATGGCATGGGAAGAGAGGATTAAAGTTTTGAAAAATGTAGCCACCGGGATTCTGTACCTGCATGAAGGTTGGGAAGTTAAGGTCTTGCATGGGGACATCAAAGCGTGCAATGTTCTTCTTGACAAAGACATGAATGCAAGGCTGGGAGATTTTGGATTGGCTCGTATGCATGATCATCATGGACAAGTTGCCAGCACAACAAGAGTAATTGGGACAATAGGATACATTGCTCCTGAAGTGATTCGAACAGGAGCAGTGTCAACTATGTCTGATGTGTTTGGTTTTGGAATATTGGTGATGGAAGTAATTTGCGGGCGAAGATCAATTGAAGAACATAAACCAGGTCTTACTGATTGGATAATGTCTCTAATGGTGCAAGGCCAATTGCAAAGTGCTGTTGATGAAAGGTTGAAGGCTAAATGGGGATACAGCACACAGGAAGCTGAAAGATTGCTTCATTTGGGTTTGTTGTGTTCAAATTCAGACCCTAGCATTCGACCAACGATGAGGCAGGTGGTGAAAATGTTGGACGGGGAAATGGACAACACTGAGGAAGAAAACATGGAGATGAGTTTGCTTGGAAAAGTAAAATCAGCTGCAATGTGGTCTAAATGTGATTTTCCATGCAGTGGTTACCCAACATTTGATGAAATTAAGATGTTCAGTCTCAATTCTTGGACCTCTGGAAGTGGCACAAGCACTTTTCCAGGATCAGAATCAGAAATCATCATAGTAAACAGATAA 792 0.4167 MGSLDKRIFECEERMVMAWEERIKVLKNVATGILYLHEGWEVKVLHGDIKACNVLLDKDMNARLGDFGLARMHDHHGQVASTTRVIGTIGYIAPEVIRTGAVSTMSDVFGFGILVMEVICGRRSIEEHKPGLTDWIMSLMVQGQLQSAVDERLKAKWGYSTQEAERLLHLGLLCSNSDPSIRPTMRQVVKMLDGEMDNTEEENMEMSLLGKVKSAAMWSKCDFPCSGYPTFDEIKMFSLNSWTSGSGTSTFPGSESEIIIVNR 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7200g00014 263 Pfam Protein kinase domain 13 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7200g00014 263 Gene3D Transferase(Phosphotransferase) domain 1 1 216 - -
Vium7200g00014 263 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7200g00014 263 PANTHER - 2 202 - -
Vium7200g00014 263 SMART serkin_6 1 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7200g00014 263 FunFam L-type lectin-domain containing receptor kinase S.4 1 205 - -
Vium7200g00014 263 SUPERFAMILY Protein kinase-like (PK-like) 2 192 IPR011009 -
Vium7200g00014 263 Coils Coil 261 263 - -
Vium7200g00014 263 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7200g00014 Vium-Chr7200 143177 143968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7200g00014 2 207 Receptor kinase-like Gene Family AT3G53810 47.867 9.80e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium7200g00014 Pkinase 1.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7200g00014 - - gmx:100804553 410.994