Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7200g00013 ATGGGGTGCATAGCTTCCAAGAGTGCAGCTGTTGATGACAGCAGGGAGGGTGTGGCAAGGGAATTGACTTCATCTAGCAGAAGGACATCTGAGATGAAGATTTCTGCATTGGGTTCCAAGAAAAGGGTCGATGGAGTTTGGGGGAAAGATAAGGTTTTAGATGGTGCTGATATGAAAGTTTCACTAATTGGCAAGGAATCTGATGGTTCGAGGCGGTTGTTTGATTCTCAGAATGGGAAGAAAAAAAAGGAGAAACCTGAATCGGCTGTTCTTGATCATCCTGGTGTTGGAAGGGTTCCGAAGGGTTTAGAGGGAGAGCAAGTTGCAGCAGGTTGGCCAACTTGGCTTTCTTCTGTTGCTGGTGAAGCTATCCAAGGGTGGATACCACGGAGGGCAGATACTTTTGAGAGGTTTGGTAAAATTGGCCAAGGAACCTACAGTTCTGTGTATAAGGCACGTGATTTGACTCACCAAAAGATCGTTGCATTGAAGAGGGTGCGCTTTGATAATTTCGATGCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTTGTTCTGCGTAGGCTTGACCATCCAAATATAATAAAGTTGGAAGGATTGATAACGTCGCAGACATCTCGCAGCTTGTACCTTGTTTTTGAATACATGGAACATGATCTTACAGGACTTGCATCAAGTCCTACCATTAAGTTTTCCGAACCACAGGTTAAATGCTATATGCAGCAGCTTCTTAGTGGATTGAATCATTGTCATAGTCGAGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTTATTGACAACAATGGCACCTTAAAGATTGCAGATTTTGGTCTGGCAAATTTTATTGACCCCCATCACAAGGTTCCATTGACCAGCCGTGTAGTAACTCTGTGGTATAGACCACCAGAACTCTTACTCGGAGCATCTAATTACGGAGTTGCAGTAGATTTGTGGAGCACTGGTTGCATACTGGGGGAATTATATTGTGGCAGGCCTATTTTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAGGATTTTTAAACTTTGTGGCTCACCATCTGAGGACTATTGGCGTAAGCTTCGGTCACCACATTCAACAGTATTCAGGCCTCCCCACCACTATAGGCGTTGTGTTGCTGAAACATTTAAAGAATATCCATCTGCTGCCACAAAGCTCATTGAATCCCTACTTGCTTTAGATCCCACACTTCGAGGAACAGCGGCTACATCCCTGAAGAGTGAGTTCTTTTCAACGGAACCTCTTCCCTGCCATCCATCAAGTTTACCAAAATATCCTCCCTGCAAAGAGATGGACACTAAATTTTGGGAAGTAGCAACAAGGCAAGGAGCTGATGGGAGAAAGGAGAAGAAAAATGGACCAAGAGTTCGGCAAGAAAAAGAACCTCAGACGTTTATTTTATCCAAAGACAATGAGGGCTGTCACATATCAATGCAGCAAGGGCAACGCCTTCCTAACTCAAGGAGCCGGAACGAATTCTTCAACCCTCACAGAGAACCGGTTTCTGGACATTTGGTTTTTCCACAGAAAGTGTCAGAGGATCATAAATCAACAGTAAATTATTTCTCCGGGCCTCTTTATCAGAGGCCTATGCATTCAGGTCCATTGGTTCCAGGCAATGGCTGGGAAATGGCTGGAAAGGAAGCTGGTGAGCGGCCTCATGTTTCAAACAAAGCCACCCTACCAAAACTATCTGGAGTGGCATCTAGGACTTCATTGTCAGGAGATAAAATGGAAAACCCTCTTTCTTCAAGGCCCCGAGAATCAATTCAAGCTCAAAGATCTTTGGAGTCAACTAATGCTGGATCAGAGTCAAGAAGAAGGCATGATAAGAAACGCCATTCTCAGAGAATTGATCACAGGCAAATCGAAAACGCGAGAGTCTCGACTCAAACATTAATTCAGGAGGGCCATGGACCGATGGGAAACAATATCTGCCATCTCTCTGGTCCATTACTGATTTCATCAAACAATGTGGATCAGATGCTCAAAGAGCGTGATCGAAAGATCCAAGAACATTCTAGACGAGCACGAATGAAGTCAGGTGAGATAGCTCGTGCAAACCAAAATTAG 2100 0.4448 MGCIASKSAAVDDSREGVARELTSSSRRTSEMKISALGSKKRVDGVWGKDKVLDGADMKVSLIGKESDGSRRLFDSQNGKKKKEKPESAVLDHPGVGRVPKGLEGEQVAAGWPTWLSSVAGEAIQGWIPRRADTFERFGKIGQGTYSSVYKARDLTHQKIVALKRVRFDNFDAESVKFMAREILVLRRLDHPNIIKLEGLITSQTSRSLYLVFEYMEHDLTGLASSPTIKFSEPQVKCYMQQLLSGLNHCHSRGVLHRDIKGSNLLIDNNGTLKIADFGLANFIDPHHKVPLTSRVVTLWYRPPELLLGASNYGVAVDLWSTGCILGELYCGRPILPGKTEVEQLHRIFKLCGSPSEDYWRKLRSPHSTVFRPPHHYRRCVAETFKEYPSAATKLIESLLALDPTLRGTAATSLKSEFFSTEPLPCHPSSLPKYPPCKEMDTKFWEVATRQGADGRKEKKNGPRVRQEKEPQTFILSKDNEGCHISMQQGQRLPNSRSRNEFFNPHREPVSGHLVFPQKVSEDHKSTVNYFSGPLYQRPMHSGPLVPGNGWEMAGKEAGERPHVSNKATLPKLSGVASRTSLSGDKMENPLSSRPRESIQAQRSLESTNAGSESRRRHDKKRHSQRIDHRQIENARVSTQTLIQEGHGPMGNNICHLSGPLLISSNNVDQMLKERDRKIQEHSRRARMKSGEIARANQN 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7200g00013 699 MobiDBLite consensus disorder prediction 678 699 - -
Vium7200g00013 699 MobiDBLite consensus disorder prediction 1 33 - -
Vium7200g00013 699 MobiDBLite consensus disorder prediction 451 471 - -
Vium7200g00013 699 CDD STKc_CDK9_like 135 419 - -
Vium7200g00013 699 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Vium7200g00013 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vium7200g00013 699 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7200g00013 699 MobiDBLite consensus disorder prediction 69 91 - -
Vium7200g00013 699 Gene3D Transferase(Phosphotransferase) domain 1 218 456 - -
Vium7200g00013 699 MobiDBLite consensus disorder prediction 571 609 - -
Vium7200g00013 699 MobiDBLite consensus disorder prediction 69 99 - -
Vium7200g00013 699 FunFam probable serine/threonine-protein kinase At1g54610 218 459 - -
Vium7200g00013 699 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7200g00013 699 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Vium7200g00013 699 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Vium7200g00013 699 PANTHER CELL DIVISION PROTEIN KINASE 133 425 - -
Vium7200g00013 699 MobiDBLite consensus disorder prediction 547 632 - -
Vium7200g00013 699 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7200g00013 699 SUPERFAMILY Protein kinase-like (PK-like) 128 426 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7200g00013 Vium-Chr7200 130906 136526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7200g00013 127 460 Core Cell Cycle Gene Families AT5G10270 48.571 1.07e-108 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium7200g00013 Pkinase 4.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7200g00013 - K08819 gmx:100781209 1192.56