Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7200g00012 ATGTCGGAGAGAAATGCTGATAAGGGAAAGAGGATCATCATTGGTGTTTCAACCTTGTTCTTGGTGGCTGTAGTTGGGGCTATCGTATTTGGTTTCAACCTCGTTGAGAGTGGTTCAAATGAAAATGGTGATAAAGAGAATGTTAATAACAAAAATCAACATGTTGCTGCCTCTGTAAAAGCTGTCCAAACCCTTTGTCTTCCCACAAATTACAAGGAAGAATGTGAGAAAAATCTCATGACAGGTGTCGGAGACAGAACAACAACAGATCCATATGAACTTATCAAACTTGCTTTCAATATCACCATCGAAAAAATTACTGATAAATTCGAAGAAATGAATATCTTGCATGACATTGAGAAGGAGCCTAGAGCGAAGATGGCACTGGAAACATGCAAACAACTCATGGATCTTTCGGTTTCGGAGTTAGAAAGGTCATTTATTGGAATGAGCGAGTTTAACCTGATGAGTGTTGATAAAATCCTCATGAACTTAAAAGTTTGGCTAAGTGGTGCACTTACATACCAAGACACTTGCCTGGATGAGTTTGAGAACACCACCAGCGATGCTGGTAAAAAGATGCAGGATTTATTAACGACAGGCATGCATATGACTAGCAATGGTCTTTCCATCATAACAGCATTGTCTGATACTTTCACAGATTTTAATGCCACAAAATTACTAGGACGTCGTCTCCTTCAAGATTCTGAGTCACCATCATCGGTTGATAATGGAGGACTAAACGAAACACTGATATTGAATCGCAAACCTAATGTGACGGTAGCGAAAGATGGCAGTGGAGATTTCATAACCATTAATGAGGCACTGAACAGTGTGCCAAGGAAAAATAAAACGCCATTTGTGATCTACATCAAGGAGGGCATCTATCAAGAGTATGTTGAAGTGAAAAAGAATATGACTCATGTGGTTTTCATCGGTGATGGTGGCAAAAAGACAAGAATAACAGGCAACAAAAACTACATAGATGGAATCACCACTTATAAAACTGCCACCGTTGCTATTCAAGGAGATAACTTCGTGGCCATGAACATGGGATTTGAGAACTCTGCCGGAGCTGAGAAGCATCAGGCAGTGGCATTGAGAGTTCAAGCAGACAAGTCTGTGTTCTTCAATTGTTCAATGGATGGGTATCAAGACACACTTTACGTACACACCCTACGTCAGTATTACAGGGATTGCACCATTTCTGGTACCATCGACTTTGTGTTCGGAAATGCACTTGCTGTTTTCCAGAATTGCACTTTCGTGGTCCGAAAGCCAATGGAAAATCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAGAAAGAACAACCTTCTGCAATAGTGATCCAAGGAGGTTCCATTGTGGCTGACCCTGAGTTTTACCCAGTAAGATTTGTTAACAAAGCTTACCTAGCTCGTCCATGGAAGATATACTCGAGGACCATTTTCATGGATACGTACATCGATGACTTGATTCAAGGTGAAGGATATTTGCCATGGCAAGCATTAGAAGGACCCATTGGTATGGATACTTGCTTTTATGCAGAGTATCACAACACCGGTCCTGGTTCAGACAAATCCAAGCGTGTGAATTGGAATGGGATTTTGAACCTTAATTCAAAAGCTGCACGTTTGTTCTCACCTTCCAAGTTCTTTCATGGACTTGATTGGGTTCGGGCTACTGGAGTTCCTTGCTTCCCTAGCGTGCCCCCACACTACAGGCACAAGCAAACCATATTACCCTGGTGA 1755 0.4154 MSERNADKGKRIIIGVSTLFLVAVVGAIVFGFNLVESGSNENGDKENVNNKNQHVAASVKAVQTLCLPTNYKEECEKNLMTGVGDRTTTDPYELIKLAFNITIEKITDKFEEMNILHDIEKEPRAKMALETCKQLMDLSVSELERSFIGMSEFNLMSVDKILMNLKVWLSGALTYQDTCLDEFENTTSDAGKKMQDLLTTGMHMTSNGLSIITALSDTFTDFNATKLLGRRLLQDSESPSSVDNGGLNETLILNRKPNVTVAKDGSGDFITINEALNSVPRKNKTPFVIYIKEGIYQEYVEVKKNMTHVVFIGDGGKKTRITGNKNYIDGITTYKTATVAIQGDNFVAMNMGFENSAGAEKHQAVALRVQADKSVFFNCSMDGYQDTLYVHTLRQYYRDCTISGTIDFVFGNALAVFQNCTFVVRKPMENQQCIVTAQGRKEKEQPSAIVIQGGSIVADPEFYPVRFVNKAYLARPWKIYSRTIFMDTYIDDLIQGEGYLPWQALEGPIGMDTCFYAEYHNTGPGSDKSKRVNWNGILNLNSKAARLFSPSKFFHGLDWVRATGVPCFPSVPPHYRHKQTILPW 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7200g00012 584 PANTHER PECTINESTERASE 16 561 - -
Vium7200g00012 584 FunFam Pectinesterase 253 571 - -
Vium7200g00012 584 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Vium7200g00012 584 SMART PMEI_2 57 211 IPR006501 GO:0004857
Vium7200g00012 584 FunFam Pectinesterase 58 216 - -
Vium7200g00012 584 Gene3D - 253 571 IPR012334 -
Vium7200g00012 584 Pfam Pectinesterase 258 556 IPR000070 GO:0030599|GO:0042545
Vium7200g00012 584 Pfam Plant invertase/pectin methylesterase inhibitor 61 211 IPR006501 GO:0004857
Vium7200g00012 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 216 IPR035513 -
Vium7200g00012 584 NCBIfam pectinesterase inhibitor domain 55 215 IPR006501 GO:0004857
Vium7200g00012 584 CDD PMEI-like_3 64 216 - -
Vium7200g00012 584 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Vium7200g00012 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 216 IPR035513 -
Vium7200g00012 584 SUPERFAMILY Pectin lyase-like 256 567 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7200g00012 Vium-Chr7200 127144 129084 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7200g00012 1 566 Carbohydrate Esterase AT3G05610 47.561 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7200g00012 K01051 - gmx:100803527 902.508