Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7200g00002 ATGGCCTTAAACCAGTATTTTGAGGACGTTGTGCCCCAGTTGGATTCCTTTGAAGATATATCATCTCTGAAAACATGGAAATGTGCTGGTGAAGATGATATTGCAGATTCGGATAAAAAAGCCTCCAGTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTTGTCACTCTTTGTGGTCACCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAACTTCCAAAGTGCCTCCTCCGAAAATGAAGAGAAGCAACAATGTCCAGTGTGCAAATCAGAAATCTCACAGTCATCACTTGTTCCATTATATGGCCGTGACCAAACCACACTACCCTCCAAAGGAAAAGGTCACCAAGTAGGGATTGTGATACCAAGAAGACCCCTTGGTCCTTCATGGCTGACCAACTCATCAAGATCACGTGATTCTGAAACTGTTTCCCGACATACTTCACATGTTTATCACCGCCATTATCCCAATCATCCTCAACAATTCAACTCAATTCCTGGCAGTTACCCTTCATCAATGTTCAACACTGGTGGTTCACTAGCCAATGCATTTGATCCAACATACGGAGTCTTTGGAGAGATGATATATGCAAGGGTCTTTGGAAACCAAATGACTAACATCTACACATACCCGAATTCATATGATCTTTCAGGGAACAGTAATCCAAGGGTAATAAGGCACTTAATGCAAGTTGATAGGTCACTCAATAGAATCACATTTTTCCTCCTTTGTTGCGTAGTTTTGTGTCTTCTCTTATTCTGA 777 0.4234 MALNQYFEDVVPQLDSFEDISSLKTWKCAGEDDIADSDKKASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFQSASSENEEKQQCPVCKSEISQSSLVPLYGRDQTTLPSKGKGHQVGIVIPRRPLGPSWLTNSSRSRDSETVSRHTSHVYHRHYPNHPQQFNSIPGSYPSSMFNTGGSLANAFDPTYGVFGEMIYARVFGNQMTNIYTYPNSYDLSGNSNPRVIRHLMQVDRSLNRITFFLLCCVVLCLLLF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7200g00002 258 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 30 107 - -
Vium7200g00002 258 SMART ring_2 47 93 IPR001841 -
Vium7200g00002 258 SUPERFAMILY RING/U-box 46 100 - -
Vium7200g00002 258 Pfam Zinc finger, C3HC4 type (RING finger) 47 93 IPR018957 GO:0046872
Vium7200g00002 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 116 IPR013083 -
Vium7200g00002 258 MobiDBLite consensus disorder prediction 135 154 - -
Vium7200g00002 258 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
Vium7200g00002 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 255 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vium7200g00002 258 ProSiteProfiles Zinc finger RING-type profile. 47 94 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7200g00002 Vium-Chr7200 22947 25479 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7200g00002 31 258 C3H Transcription Factor Family AT4G28270 36.596 1.26e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7200g00002 K10666 - gmx:100785491 415.231