Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7197g00002 ATGGGGGATCAGGGTGTTTTAGGTGTTAACGTTGGAAGAGAGGAGGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGACGAGGAAGCGTGGAAAGAGACTGAGGAGGCTGTGGTGGGAGGGTTGAAGGACGAGCTTGATGAATTTTCAGTAAAAATGTTCTTCAAGGGGTTGTCAATGGCTGGGGTTGAAAATCCAAGTTCTGGGTTTTCTGGAATTGGAGTTGTAATGGAAAGGTCACCAGGGCTTCCTGCTATAAGGGTGCAGAAAAAACTTGACTTTTATACGGAGGAGTCTGTGGTTGACTCTTTGGCACTCTTGGATGGTTTGCTGGAAGCTGTGCGGAAAAAGATCCGCAGGGTTTATGCTTTCACAGATTCCGAGTTGTTGCATGATCAGATAACATTTGGGAAGAAAATGGACATGCCTCTTTTGATGGCATTGAGAGAAAGGATTCTGGAACTTGCCAATAATTTTGAAGATTTTGTTTTAAAGCTTATACCGTCTACTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGGCTAGTCACTTTCCCCATAAGTGGAGAGAGATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCTAATTATGATTACCCTGAAATGTTCGCACACATTCTGTTCACATTGCTTGAGGGCCTATGCCGATGGTAAAGTACAATCATCTCAAGTTCCTATAAAATGCCCTCAACCAGGGTGCAAGTATTGCATCTCTGCAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCATTTGAATCACTGGAGAAAGCTCTTTCCCAAGCCAATATTGACAATTCAGATAGAATTTATTGCCCATTTCCAAATTGTTCTGTTCTCCTTGATTCTCATGAATGTTTATCAGCTAGGACAAGTTCATCAAGTCAGTCTGACAATTCTTGTATCGAGTGTCCTGTTTGTAAGAGGTTCATCTGCGTGGACTGTAAGGTTCCTTGGCATTCTTCTATGAATTGTGTAGAATTCCAGAATCTGCCAGAGGACGAGAGGGATGCTTCTGACATATCCTTGCACCGTCTTGCTCAAAATAAGAGGTGGAAGCGTTGTCAACAATGTCGTACAGTGATTGAACTTACTCAAGGCTGTTACCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCGGAATACCGAGAAGGGCAACAAACATGCCAATGTGCATATTGGGATGAAAATAACTCAGAAAACTCAGTGGCACACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAACTCTCTCTCCATGATCGTGGATGCATACTCAGACCAGGAAAGATCACAGCTTGCGCTGATTCAGAGGTTTCTGGCCGGCGGTTTCAGTCTCAGTGACCACAATCCTTACCAGTCTCCTCCTCGCTGTACAGATTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTACATTCAATGA 1545 0.4362 MGDQGVLGVNVGREEEEDEFCSCCGDEDEEAWKETEEAVVGGLKDELDEFSVKMFFKGLSMAGVENPSSGFSGIGVVMERSPGLPAIRVQKKLDFYTEESVVDSLALLDGLLEAVRKKIRRVYAFTDSELLHDQITFGKKMDMPLLMALRERILELANNFEDFVLKLIPSTDLEQPLHLAKVAIGLVTFPISGERLLKNCSICCDDKPVLIMITLKCSHTFCSHCLRAYADGKVQSSQVPIKCPQPGCKYCISATECRSFLPFTSFESLEKALSQANIDNSDRIYCPFPNCSVLLDSHECLSARTSSSSQSDNSCIECPVCKRFICVDCKVPWHSSMNCVEFQNLPEDERDASDISLHRLAQNKRWKRCQQCRTVIELTQGCYHMTCWCGHEFCYSCGAEYREGQQTCQCAYWDENNSENSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7197g00002 514 SUPERFAMILY RING/U-box 199 276 - -
Vium7197g00002 514 FunFam RBR-type E3 ubiquitin transferase 196 280 - -
Vium7197g00002 514 SUPERFAMILY Ribonuclease H-like 67 170 IPR012337 -
Vium7197g00002 514 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Vium7197g00002 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 281 IPR013083 -
Vium7197g00002 514 Gene3D - 337 462 - -
Vium7197g00002 514 CDD Rcat_RBR_unk 365 401 - -
Vium7197g00002 514 FunFam RBR-type E3 ubiquitin transferase 337 462 - -
Vium7197g00002 514 Pfam Reverse transcriptase-like 66 169 IPR002156 GO:0003676|GO:0004523
Vium7197g00002 514 ProSiteProfiles TRIAD supradomain profile. 196 414 IPR044066 -
Vium7197g00002 514 SUPERFAMILY RING/U-box 352 416 - -
Vium7197g00002 514 CDD BRcat_RBR_unk 281 342 - -
Vium7197g00002 514 SMART ibrneu5 267 339 IPR002867 GO:0008270
Vium7197g00002 514 SMART ibrneu5 349 408 IPR002867 GO:0008270
Vium7197g00002 514 Gene3D - 52 186 IPR036397 GO:0003676
Vium7197g00002 514 SMART ring_2 200 251 IPR001841 -
Vium7197g00002 514 SMART ring_2 369 410 IPR001841 -
Vium7197g00002 514 FunFam RBR-type E3 ubiquitin transferase 52 187 - -
Vium7197g00002 514 ProSiteProfiles Zinc finger RING-type profile. 200 244 IPR001841 -
Vium7197g00002 514 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 132 461 IPR031127 GO:0004842|GO:0016567
Vium7197g00002 514 Pfam IBR domain, a half RING-finger domain 274 339 IPR002867 GO:0008270
Vium7197g00002 514 Pfam IBR domain, a half RING-finger domain 359 408 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7197g00002 Vium-Chr7197 7672 14043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7197g00002 51 399 C3H Transcription Factor Family AT2G19610 25.348 1.05e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7197g00002 - - gmx:100783040 972.615