Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7195g00001 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCTGTTCCTGTTTTAGTTTCTAAAGCTCTAGAACTATTTTTGCAAGATCTTTGTGACCGTACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCGTTGCATTTGAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTTAGCAGAGTTCCTGATTACGGTCATGGTCATGGCCATGCTGAGGCTGGTGCTGATGATCGGGCCATTTCAAAAAGAAGGAAAGCTGTTGGTGATGATTGTAATGACAGTGATGAAGAGGTTAAGAGAAGCAAGATGCAAGAGTTGAGCCACACTGGCAGTACTGGTAGGGGAAGAGGCCGGGGTAGAGGTAGAGGCCGTGGCCGAGGGCGACCACCTTTAGTAAGAGACACATATCATCAGGATGCTGAATCTGAGCCATGCCCCTCTGTTCAGCCGAGCAACCAACAAAGTGCTAACCCATGTGTTGCAGTGGACAGTGGTTCTGAGTCAAAAGATATACCAAAGGAGGAGAATGTTGCAGCTCCTGTTGTAAGCACTGATTCACTCCGAAACATTGACCTGAATGCCATTACGAATGAAAATGATGACAAAAAAGCTAGCGTGGCAGAACCTCCTTCAACAGAGGGCAAGCATGAAGAGATTCTGGGGTGGCCCCTTTCTGATGTGGACAAGATGGCCATTGATTCGACACAGCTTGCGCAGCTGAGTAGGCCATTAGAAGAGGAGGAGGAAGATTATGACGAGGAGGAGGGGTAA 849 0.4641 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHAEAGADDRAISKRRKAVGDDCNDSDEEVKRSKMQELSHTGSTGRGRGRGRGRGRGRGRPPLVRDTYHQDAESEPCPSVQPSNQQSANPCVAVDSGSESKDIPKEENVAAPVVSTDSLRNIDLNAITNENDDKKASVAEPPSTEGKHEEILGWPLSDVDKMAIDSTQLAQLSRPLEEEEEDYDEEEG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7195g00001 282 SUPERFAMILY Histone-fold 4 96 IPR009072 GO:0046982
Vium7195g00001 282 MobiDBLite consensus disorder prediction 110 203 - -
Vium7195g00001 282 MobiDBLite consensus disorder prediction 168 188 - -
Vium7195g00001 282 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vium7195g00001 282 MobiDBLite consensus disorder prediction 262 282 - -
Vium7195g00001 282 MobiDBLite consensus disorder prediction 222 245 - -
Vium7195g00001 282 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vium7195g00001 282 MobiDBLite consensus disorder prediction 110 130 - -
Vium7195g00001 282 FunFam dr1-associated corepressor homolog 1 86 - -
Vium7195g00001 282 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7195g00001 Vium-Chr7195 7 4861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7195g00001 1 268 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.650 9.12e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium7195g00001 CBFD_NFYB_HMF 2.1e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7195g00001 K21752 - gmx:100814712 436.032