Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7187g00012 ATGTCAACCCGCAAACACAAATCAGAAGAAGTGAGCAGCAACGAGTGGGAAGTGATACACATGAGCGAGCAAGAAGAGGATCTGATTCATAGGATGTACAAGCTGGTCGGAGACAAGTGGAATTTGATAGCGGGTCGCATTCCGGGTCGTTAAAGAGAAGAGATAGAGAGATTCTGGATTATGAGAGCCACACTCACACTTCTCGACCGAACAAATTCAACGTAA 225 0.4578 MSTRKHKSEEVSSNEWEVIHMSEQEEDLIHRMYKLVGDKWNLIAGRIPGRXREEIERFWIMRATLTLLDRTNST 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7187g00012 74 Gene3D - 22 62 - -
Vium7187g00012 74 FunFam MYB-like transcription factor 20 62 - -
Vium7187g00012 74 Pfam Myb-like DNA-binding domain 22 60 IPR001005 -
Vium7187g00012 74 CDD SANT 21 59 IPR001005 -
Vium7187g00012 74 SUPERFAMILY Homeodomain-like 22 60 IPR009057 -
Vium7187g00012 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 20 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7187g00012 Vium-Chr7187 74264 76069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7187g00012 21 59 MYB Transcription Factor Family AT5G52600 58.974 2.27e-12 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium7187g00012 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7187g00012 K09422 - gmx:100814431 98.5969