Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7187g00004 ATGGAACAGTTCCGGCATATCGGAGAGGTGGTTGGGAGTCTGAAAGCGCTTATGGTTCTGCGCGATGAAATCCAAATCAACCAACGTCAATGCTGTTTGATCCTGGACATATTCAGTTTGGCGATGGACACGATCGCAGAGGAGATGCGGCAGAACCTGAAGCTGGAAGAGAGGAACAGCAAATGGAAGGCTCTGGAATCTCCTCTGACAGAGTTGTGCAGGGTTTTCAAGGAGGGAGAGCATTACATAAAGCAGTGTTTGGATTCCAAACATTGGTTGGGGAAAGCCATTACCCTCTCTCACCACCGAGACTGCGTGGAATTCCACATCCACAACCTTCTCTGCTATTTCCCGGCGGTGATCGAGGCGATCGAGATTGCAGGGGAGATTACGGGTTTAGATCCGGAGGAGAAGGCAAAGAAGAAGGTGATACTGGGTCGGAAGTATGACGTGGAATGGAAGGACCCGGAGCTGTTCCAATGGAGGTTCGGGAAGCAGTACCTGGTCCCGCGCGGGATTTGCAAGAAGTTGGAGAACGCCTGGAGAGAGGACAGGTGGAGGCTCATCGAGGCCATCAAGGACAAGACTGCGAAGGAAGGTGGTTCAGCTGTGTTTAGGGAGAGCGAGCATGGCCTCGCTGATATGCTCCTCAAAAAGCTTCTCAATGGTTCGGAGATCGGCCCAATTGCGGTGCTTGTTGGGTCCAAAGGTTTCCAGGTGAGACGGAGGTTGGGCCACCGGAAGGACTTCAAGGAAATCCAATGGTTGGGGCAAAGTTTCGCGATGAGGAACTTTCATGGGGAGAGAGAAGCACACCAGACTGAGGTCTCCTCTATTCTCTCGCTTTCACACCCCAACATATTGCAATACCTTTGCGGGTTTTACGACGAGGAGAAGAAAGAGTTCTCTTTTGTGATGGAGTTAATGCACAAGGATCTGTGGACTTACATGAAAGAGATTTGTGGTCCTAGGAGGCAGATTCTATTCTCTATCCCTGTTGTGGTGGATCTCATGCTTCAGATGGCCAGAGGAATGGAGTACCTGCATTCCCAAAACATTTGCCATGGACAACTTAACCCTTGTAATATTTACCTCAAAAAAATGAACTCCCAAGAGGATTATTTTCAGGCAAAGGTTGCAGGCTTTGCCTTGTCTTCTGTCAACAATGCTAGTCCTGACGATACTGCCATCCAAGACTTTAACCCTTTAACCTGGTATGCTCCTGAAGTTCTGTCCCGTTTGGAACAAAATAATGGTGGTGCTTCTTCTAAGGAAGCCGATGCCTACAGCTTTGGGATGATATGCTTCCAGTTGTTGACAGGAAAAGTGCCTTATGAAGATAACCACCTTCAAGGAGACAGAATTAGACAAAACATAAAGGTCGGTGAGAGACCTTTGTTTCCTCACCGTTCCCCGAAATACCTTGTGAATTTGATCAGGAAGTGCTGGCAAGCTGACCCTGGTCAGCGTCCCAGCTTCTCCTCCATCTGTAGGATTTTGCGGTACACCAAAAAATTCCTTGCCATGAACTCAGAGGCCCAACTCATCAACCCTGAGCTCAACTTTCTTGAGGTTCCGCCTGTGGATTGCTTTGAGATAGAGACAACGTTCCTAAAGAGCTCTTCAACCGAGAGGTCATCTTGTGTGTCCGCTGTGTCCCAGATACCCTATGAAATGTTTGCTTATAAGGTTGTGGAGAAAGAGAAAATGAATCCTAACAACAGTACTACCAAAGATGAATGCTGCGAGCACCACCAAAAGGATGTGTGTAGGAGTGAAAGTGATGACCCAAGTACAGAGTGCGATGATGATAACGCCTCCATAGTGAAAGATCCGCTCCCTCAAACAACCCATCCTACATCAGTTTGCAGTGACGCACAGTTTGTTTCCTCAGAATTCCCTTACAAGAAAACGGTTAGTATAAAGAACCAAACACACGTGAAGGCAAAGAATGAACAAGAAAAACAAATATTGCGGAAGACAAAATCATTTCGACCTTCTTTATCGAATCGAGTTTCAAGGACGGGAAAGGTGAATACACCATCATTGCCACCAAGCAATTTGAGTCCAAGTAAAAGACGATCTTTCCTGGGGTCTCAATCGGATCGCAACTCCAAAGGGAATCGATCAGCGTCACCACCAGCATTACCATCAGCATCACCATCACTACCCATTCCTTCAAGGAAAAAACACGATGGCCATTTGTCGGATACTAAGACCAGTGTAAGGTTGAAAAAAATGGATCAGTCGACGTTACCTAGATATGGCAGCATGACAGATAGTTTAAGGATGAAGAAGTCACAAATGACGTTGAACCAATCTTTGAGCGCGGGAAGAATGAGACGTGCCAACACTGAGACCGATTTGAAGGGGCTCACACGAACCAATCTACTGAGCACTCCAAGAACATCCACAAGGAGCAGAAAAGGTGGTAATGTCTCAGTTGCGGACAACGGTTCAAGGATGTCAACAGGTGGGTTTTCGCCGTGGGCATTGAGTCCCCAAAGCCCCCATTTAAGGACAAATAAAGCAACCTGTCATATCTCTGAGTCCGAAAGCAGTTTTGTGAAGAAAAGAGGAAGCATGTCACCGTTCGCAACTTGTGGCCATGTCTCGGATTAA 2622 0.4722 MEQFRHIGEVVGSLKALMVLRDEIQINQRQCCLILDIFSLAMDTIAEEMRQNLKLEERNSKWKALESPLTELCRVFKEGEHYIKQCLDSKHWLGKAITLSHHRDCVEFHIHNLLCYFPAVIEAIEIAGEITGLDPEEKAKKKVILGRKYDVEWKDPELFQWRFGKQYLVPRGICKKLENAWREDRWRLIEAIKDKTAKEGGSAVFRESEHGLADMLLKKLLNGSEIGPIAVLVGSKGFQVRRRLGHRKDFKEIQWLGQSFAMRNFHGEREAHQTEVSSILSLSHPNILQYLCGFYDEEKKEFSFVMELMHKDLWTYMKEICGPRRQILFSIPVVVDLMLQMARGMEYLHSQNICHGQLNPCNIYLKKMNSQEDYFQAKVAGFALSSVNNASPDDTAIQDFNPLTWYAPEVLSRLEQNNGGASSKEADAYSFGMICFQLLTGKVPYEDNHLQGDRIRQNIKVGERPLFPHRSPKYLVNLIRKCWQADPGQRPSFSSICRILRYTKKFLAMNSEAQLINPELNFLEVPPVDCFEIETTFLKSSSTERSSCVSAVSQIPYEMFAYKVVEKEKMNPNNSTTKDECCEHHQKDVCRSESDDPSTECDDDNASIVKDPLPQTTHPTSVCSDAQFVSSEFPYKKTVSIKNQTHVKAKNEQEKQILRKTKSFRPSLSNRVSRTGKVNTPSLPPSNLSPSKRRSFLGSQSDRNSKGNRSASPPALPSASPSLPIPSRKKHDGHLSDTKTSVRLKKMDQSTLPRYGSMTDSLRMKKSQMTLNQSLSAGRMRRANTETDLKGLTRTNLLSTPRTSTRSRKGGNVSVADNGSRMSTGGFSPWALSPQSPHLRTNKATCHISESESSFVKKRGSMSPFATCGHVSD 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7187g00004 873 Pfam Protein of unknown function (DUF1221) 21 235 IPR010632 -
Vium7187g00004 873 ProSiteProfiles Protein kinase domain profile. 227 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7187g00004 873 FunFam Kinase family protein 235 513 - -
Vium7187g00004 873 MobiDBLite consensus disorder prediction 727 744 - -
Vium7187g00004 873 MobiDBLite consensus disorder prediction 589 621 - -
Vium7187g00004 873 Gene3D Transferase(Phosphotransferase) domain 1 242 520 - -
Vium7187g00004 873 Pfam Protein tyrosine and serine/threonine kinase 268 499 IPR001245 GO:0004672|GO:0006468
Vium7187g00004 873 MobiDBLite consensus disorder prediction 647 661 - -
Vium7187g00004 873 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 254 501 - -
Vium7187g00004 873 MobiDBLite consensus disorder prediction 643 756 - -
Vium7187g00004 873 MobiDBLite consensus disorder prediction 800 844 - -
Vium7187g00004 873 SUPERFAMILY Protein kinase-like (PK-like) 261 521 IPR011009 -
Vium7187g00004 873 MobiDBLite consensus disorder prediction 662 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7187g00004 Vium-Chr7187 22268 25621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7187g00004 275 500 MAP Kinase Kinase Kinase AT5G58950 28.814 1.40e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_Gdt Vium7187g00004 PK_Tyr_Ser-Thr 1.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7187g00004 - - vum:124844837 1734.54