Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7187g00001 ATGACTACGCCACCGACCAAGTTCACTCACCACACCAAACTACTCACACTCACTCACACCCAACACCACCCACCAAAAAACCCATGTTCCAGACTTGTCAGAATAACCGTCACGGACACTGACGCCACCGACTCCTCCAGCGACGAAGAACAGACCTTTCACTCTTCCAAGCGCCAACGCCAACGACAACGCCACACCAAATTCATCAACGAGATTTCCATCGAGCCCTGCGCTGCCGAGAACGACGCCGTCTTTTCCGGGAAGAGAGTTCGAAGAAGGAGCGTGGTGGGCAAGGGCAGAGTTGCAGAGACTCCGCGCGGGTCGACCGGAAAGAAATTCCGCGGAGTGAGACAGAGGCCGTGGGGAAAATGGGCTGCCGAGATACGAGACCCGTCGCGACGCGTGAGGTTATGGTTGGGTACCTACGACACTGCCGAGGAAGCCGCCTTAGTGTACGACAACGCGGCCATTAAGCTGCGTGGACCCGACGCGCTCACTAATTTCATAACGCCACCTGCCACGTGGCACAACAAAGACCAGACGCCGGTGTCCAACGGTTACGCCTCCGTTGAAGAAACTCAGAACAAAAACCTGTTTTCTCCCACCTCCGTACTTCATTCTTGCTCTTTGTCTGAGGAAGCTGAATCCGTGACCGGCAAAGACGATGACTACTCCTCCGTGTCTGAAAGTTCCAAGGCAAAAGCTGAGTCACCGTTTCCGGTTCCGATTCCGATTCCGAGTGAACTAAAATTTGACTTCGAAGACTGTTTGGCGGCGCCGGACGTGTACGGCGAGTTAGATGGCGCTGCGGCGGCTGAGAGTGTTTTGTTCTCCGACGATGACTGGCCTGGGGTGTTTCTCACTGCTTGTGAGGATTTTGGTTTGAAAAGTTGGCATGCAGACAGAAATCATGACTTTTTCCAAGACATCGACGATTTATTTGTCTCCGATCCTCTTCTCGCTCTTTGA 969 0.5366 MTTPPTKFTHHTKLLTLTHTQHHPPKNPCSRLVRITVTDTDATDSSSDEEQTFHSSKRQRQRQRHTKFINEISIEPCAAENDAVFSGKRVRRRSVVGKGRVAETPRGSTGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIKLRGPDALTNFITPPATWHNKDQTPVSNGYASVEETQNKNLFSPTSVLHSCSLSEEAESVTGKDDDYSSVSESSKAKAESPFPVPIPIPSELKFDFEDCLAAPDVYGELDGAAAAESVLFSDDDWPGVFLTACEDFGLKSWHADRNHDFFQDIDDLFVSDPLLAL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7187g00001 322 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Vium7187g00001 322 CDD AP2 111 168 IPR001471 GO:0003700|GO:0006355
Vium7187g00001 322 MobiDBLite consensus disorder prediction 212 238 - -
Vium7187g00001 322 FunFam Ethylene-responsive transcription factor 2 111 170 - -
Vium7187g00001 322 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 235 - -
Vium7187g00001 322 SUPERFAMILY DNA-binding domain 112 168 IPR016177 GO:0003677
Vium7187g00001 322 MobiDBLite consensus disorder prediction 40 64 - -
Vium7187g00001 322 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Vium7187g00001 322 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Vium7187g00001 322 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700|GO:0006355
Vium7187g00001 322 MobiDBLite consensus disorder prediction 215 229 - -
Vium7187g00001 322 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Vium7187g00001 322 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7187g00001 Vium-Chr7187 694 2682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7187g00001 1 213 AP2-EREBP Transcription Factor Family AT4G27950 47.368 1.01e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium7187g00001 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7187g00001 - - vra:106777252 549.28