Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7185g00001 ATGGTGCAGAGGCTCACTTATCGCAAGCGCCATAGCTATGCCACCAAATCAAATCAGCACCGGATTGTTAAGACACCTGGTGGGAAGTTGGTGTACCAGAGCACTAAGAAGAGGGCTAGTGGACCCAAGTGTCCTGTCACAGGGAAGAGGATCCAAGGGATCCCCCACTTGAGACCTACTGAATACAAGAGGTCTAGATTGTCTAGGAACCGCCGGACAGTTAACCGGGCCTATGGAGGTGTTTTATCTGGTGGAGCTGTTAGAGAAAGGATTATTCGGGCTTTCCTTGTTGAAGAACAGAAAATTGTGAAAAAGGTATTGAAGATCCAGAAGGCAAAAGACAAGCAGGCCGCTAAGAGTTAA 363 0.4793 MVQRLTYRKRHSYATKSNQHRIVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKDKQAAKS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7185g00001 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium7185g00001 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium7185g00001 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium7185g00001 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium7185g00001 120 Gene3D - 39 120 - -
Vium7185g00001 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Vium7185g00001 120 MobiDBLite consensus disorder prediction 31 51 - -
Vium7185g00001 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium7185g00001 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 116 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium7185g00001 120 Gene3D - 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7185g00001 Vium-Chr7185 851 2694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7185g00001 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 92.437 5.42e-77 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7185g00001 K02915 - aew:130778894 195.667