Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7178g00001 ATGTTCATCCATAAACATAACAAAGATGATGAGGACCATGGTGATGTAGAGGCCACAAGTGAAGAATGCATCAAATGGTTAGATGATAAGGAAAAAATGTTGGTTGTTTATGTTTCTTTTCGGAGTATGGGTGTACTTGATGAGAAGCAAATAGATGAAGTAGCTTATGGTTTGAGAGATTGTGGAAGATACTTCTTGGGGGTGGTTAGAGGCTTCTTGTGGGTGGTTAGAGGCTATGAAGAGATGAAGCTCCCTATAGGGTTTGAAAAGAAATCAGAGAAGGGTTTGAAGCTTCCAGCTAAGTTTGTGAGCAAATATGGAAATCACTTGCCCAACACAATGTTTCTTAAGCTTCCAAACGATGCAGAATGGGAAGTAAAATTGGAGAAAAGTGATGGCAGTGTTTGGTTTCAGCAAGGTTGGAAAGAGTTTGTGGAGTATCACTCTCTAGCCCATGGACACCTCTTGGTTTTAGGATACAATGGAACATCCCATTTCCATGTACTCATCTGTGATATGAGTTGCATGGAAATAGACTACCCTGTCAACAAAGCAAATCACAAAAGGGTTAAAATTAAGAGTGAAAACATTCAACCACCTAAGACAAAGAAAACAACTGAGAATAAGAAAAGGTGTTGTTCCAATTTGCAAGACACTGCATCCGATGAATTAGTCAGAGACCACAAAGGTATGTTGAAGAATCTAAATGAAGGGAAGAGAAACATGGAAGCTCTTGAGAATACCTTCATGGTGATAATGAAACCAACCTTTTTTACTACTGGGTACATGTATCTGCCAAGAGCAGCAGTGAGGAGCCAAAACAAACGTCGTGAAGAATTTGTTACTCTTGTTGTTGGGGACAGAAGATGGAGGGTTAAATTGGTTCGTTATCCAAATGATTCAGCTTACTTCACTAATTTGTTAGATTTTGCAAGGGACAATAATTTGAAAGAAGGAGATGCTTGCTTTTTCAAACTCATGAACATGGGTGATGACATGGTGATTAAGGTTTCCTTTGTAGCCAGAAACTCCTCTCTAAGAGGACAATAA 1050 0.3905 MFIHKHNKDDEDHGDVEATSEECIKWLDDKEKMLVVYVSFRSMGVLDEKQIDEVAYGLRDCGRYFLGVVRGFLWVVRGYEEMKLPIGFEKKSEKGLKLPAKFVSKYGNHLPNTMFLKLPNDAEWEVKLEKSDGSVWFQQGWKEFVEYHSLAHGHLLVLGYNGTSHFHVLICDMSCMEIDYPVNKANHKRVKIKSENIQPPKTKKTTENKKRCCSNLQDTASDELVRDHKGMLKNLNEGKRNMEALENTFMVIMKPTFFTTGYMYLPRAAVRSQNKRREEFVTLVVGDRRWRVKLVRYPNDSAYFTNLLDFARDNNLKEGDACFFKLMNMGDDMVIKVSFVARNSSLRGQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7178g00001 349 ProSiteProfiles B3 DNA-binding domain profile. 248 343 IPR003340 GO:0003677
Vium7178g00001 349 ProSiteProfiles B3 DNA-binding domain profile. 81 174 IPR003340 GO:0003677
Vium7178g00001 349 CDD B3_DNA 249 339 IPR003340 GO:0003677
Vium7178g00001 349 SUPERFAMILY DNA-binding pseudobarrel domain 248 335 IPR015300 -
Vium7178g00001 349 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 16 71 - -
Vium7178g00001 349 Gene3D - 231 344 IPR015300 -
Vium7178g00001 349 Gene3D - 84 175 IPR015300 -
Vium7178g00001 349 SMART B3_2 249 343 IPR003340 GO:0003677
Vium7178g00001 349 SMART B3_2 88 174 IPR003340 GO:0003677
Vium7178g00001 349 Coils Coil 228 248 - -
Vium7178g00001 349 CDD B3_DNA 92 172 IPR003340 GO:0003677
Vium7178g00001 349 SUPERFAMILY DNA-binding pseudobarrel domain 94 181 IPR015300 -
Vium7178g00001 349 PANTHER B3 DOMAIN-CONTAINING 86 329 - -
Vium7178g00001 349 Pfam B3 DNA binding domain 251 336 IPR003340 GO:0003677
Vium7178g00001 349 Pfam B3 DNA binding domain 92 172 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7178g00001 Vium-Chr7178 906 7820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7178g00001 93 338 B3 DNA Binding Superfamily AT3G18990 25.472 3.54e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium7178g00001 B3 8.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7178g00001 - - vum:124844820 717.613