Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7157g00009 ATGGCTGAAAAAGATGATGGTTTGGGATTGGGGTTGAGTTTGAGATGGGGAGAAAATGATGATAATAACATGAATGAACAACACCCTTTCATCATGCACAAACCTCCTCATCCTGTTCCAAACCATAGGGCTTCTTCTTTCAATAGTTTGTTCCATTTCCATGGTGCGTCTCATGTGACCAATCGAAGCTCTGAGCCACCACCTTTCTTCTTTGGAATAGACGTGAACTTGCCACCACCACCATCGGTGGCACCATGCTACGAGGAGAACGGTGTGTCTTCGCCAAACAGTGCAGTTTCGAGCATCAGCGGGAAGAGGAGCGAAAGAGAGGAGAATGAGAGGGGGTCATGTTCTCTAGGCGGAAGTGAAGATGATGACGGCGGAGGATGCGGCGGTGATGCCGATACATCGAGGAAGAAGCTCAGGTTGTTGAAAGAACAGGCCTTGGTGCTTGAAGAAACATTCAAGGAACACAACACTCTGAATCCTAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAATCCTAGACAGGTTGAAGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAGGTGCTATGAGAATCTTACGGATGACAATAGGAGGCTACAGAAGGAAGTTCAAGAGCTAAGAGCATTGAAGTTTTCCCCACAGCTCTACACGCACATGAACCCTCCAACCACTCTTACAATGTGCCCTTCCTGTGAGCGTGTTGCTGTCTCATCTGCATCCTCCTCATCGGCCGCCATGCCTTCTGTGCCGCCTTCATTCAATCACAACCCATTAGGCCCTACCATCCGGCGGCCTGTGCCTGTCAACCCTTGGGCGGCGATGTCAATTCAGCACCGTCCCCCACCATAA 903 0.4873 MAEKDDGLGLGLSLRWGENDDNNMNEQHPFIMHKPPHPVPNHRASSFNSLFHFHGASHVTNRSSEPPPFFFGIDVNLPPPPSVAPCYEENGVSSPNSAVSSISGKRSEREENERGSCSLGGSEDDDGGGCGGDADTSRKKLRLLKEQALVLEETFKEHNTLNPKQKQALAKQLNLNPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTDDNRRLQKEVQELRALKFSPQLYTHMNPPTTLTMCPSCERVAVSSASSSSAAMPSVPPSFNHNPLGPTIRRPVPVNPWAAMSIQHRPPP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7157g00009 300 SUPERFAMILY Homeodomain-like 124 195 IPR009057 -
Vium7157g00009 300 CDD homeodomain 138 195 IPR001356 GO:0003677
Vium7157g00009 300 MobiDBLite consensus disorder prediction 89 103 - -
Vium7157g00009 300 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
Vium7157g00009 300 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Vium7157g00009 300 Pfam HD-ZIP protein N terminus 1 110 IPR006712 GO:0005634
Vium7157g00009 300 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Vium7157g00009 300 Pfam Homeobox associated leucine zipper 194 227 IPR003106 GO:0006355|GO:0043565
Vium7157g00009 300 FunFam Homeobox-leucine zipper protein 18 123 199 - -
Vium7157g00009 300 Coils Coil 200 227 - -
Vium7157g00009 300 MobiDBLite consensus disorder prediction 104 120 - -
Vium7157g00009 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 265 - -
Vium7157g00009 300 SMART HOX_1 136 198 IPR001356 GO:0003677
Vium7157g00009 300 Gene3D - 143 192 - -
Vium7157g00009 300 MobiDBLite consensus disorder prediction 82 134 - -
Vium7157g00009 300 Pfam Homeodomain 138 192 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7157g00009 Vium-Chr7157 54584 57497 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7157g00009 60 298 Homeobox Transcription Factor Family AT3G60390 64.202 8.99e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium7157g00009 HD-ZIP_N 7.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7157g00009 K09338 - gmx:100798480 403.675