Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium7157g00003 | ATGGGATTGGGTGCCTCTCATGTGACCAATCGAAGCTCTGAGCCACTACCGTTCTTCTTTGGAATAGACGTCAACTTGCCACCACCATCGGTGGCACCATGCTACGAGGAGAACGGTGTGTCTTCGCCGAACAGTGCAGTTTCGAGCATCAGTGCGAAGAGGAACGAAAGAGAGGAGAATGAGAGAGGGTCATGTTCTCGAGGAGGAAGCGAAGATGATGATGGCGGAGGGTGTGTTGATGCCGATGGCGACACGTCGAGGAAGAAACTGAGGTTGTTGAAAGATCAGGCCTTGGTGCTTGAAGAAACATTCAAGGAACATAACACTCTGAATCCTAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAGTCCTAGACAGGTTGAAGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAGGTGCTATGAGAATCTAACGGATGACAATAGGAGGCTACAGAAGGAAGTGCAAGAGCTAAGAGCATTGAAGTTTTCCCCACAGCTCTACATGCACATGAACCCTCCAACCACTCTTACAATGTGCCCTTCCTGTGAGCGTGTTGCTGTCTCATCTGCATCCTCCTCATCGGCCTCCATGCCTTCTGTGCCGCCTTCAGACAATCACAACCCATTAGGCCCTACCATCCGGCGGCCAGTGCCTGTCAACCCTTGGGCCGCGATGTCAATTCAGCACCGTCCCCCACCATAA | 750 | 0.5027 | MGLGASHVTNRSSEPLPFFFGIDVNLPPPSVAPCYEENGVSSPNSAVSSISAKRNEREENERGSCSRGGSEDDDGGGCVDADGDTSRKKLRLLKDQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTDDNRRLQKEVQELRALKFSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSASMPSVPPSDNHNPLGPTIRRPVPVNPWAAMSIQHRPPP | 249 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium7157g00003 | 249 | Gene3D | - | 92 | 141 | - | - | |
Vium7157g00003 | 249 | ProSiteProfiles | 'Homeobox' domain profile. | 83 | 143 | IPR001356 | GO:0003677 | |
Vium7157g00003 | 249 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
Vium7157g00003 | 249 | MobiDBLite | consensus disorder prediction | 37 | 51 | - | - | |
Vium7157g00003 | 249 | Pfam | HD-ZIP protein N terminus | 8 | 58 | IPR006712 | GO:0005634 | |
Vium7157g00003 | 249 | SMART | halz | 143 | 186 | IPR003106 | GO:0006355|GO:0043565 | |
Vium7157g00003 | 249 | Pfam | Homeodomain | 87 | 141 | IPR001356 | GO:0003677 | |
Vium7157g00003 | 249 | MobiDBLite | consensus disorder prediction | 206 | 233 | - | - | |
Vium7157g00003 | 249 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 35 | 216 | - | - | |
Vium7157g00003 | 249 | SUPERFAMILY | Homeodomain-like | 72 | 144 | IPR009057 | - | |
Vium7157g00003 | 249 | FunFam | Homeobox-leucine zipper protein 18 | 72 | 148 | - | - | |
Vium7157g00003 | 249 | MobiDBLite | consensus disorder prediction | 52 | 69 | - | - | |
Vium7157g00003 | 249 | CDD | homeodomain | 87 | 144 | IPR001356 | GO:0003677 | |
Vium7157g00003 | 249 | Pfam | Homeobox associated leucine zipper | 143 | 176 | IPR003106 | GO:0006355|GO:0043565 | |
Vium7157g00003 | 249 | ProSitePatterns | 'Homeobox' domain signature. | 118 | 141 | IPR017970 | GO:0000981|GO:0006355 | |
Vium7157g00003 | 249 | SMART | HOX_1 | 85 | 147 | IPR001356 | GO:0003677 | |
Vium7157g00003 | 249 | Coils | Coil | 149 | 176 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium7157g00003 | Vium-Chr7157 | 25071 | 29207 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium7157g00003 | 9 | 247 | Homeobox Transcription Factor Family | AT3G60390 | 62.934 | 6.36e-92 | 271 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Vium7157g00003 | Homeodomain | 1.3e-16 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium7157g00003 | K09338 | - | gmx:100810641 | 318.161 |