Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7157g00003 ATGGGATTGGGTGCCTCTCATGTGACCAATCGAAGCTCTGAGCCACTACCGTTCTTCTTTGGAATAGACGTCAACTTGCCACCACCATCGGTGGCACCATGCTACGAGGAGAACGGTGTGTCTTCGCCGAACAGTGCAGTTTCGAGCATCAGTGCGAAGAGGAACGAAAGAGAGGAGAATGAGAGAGGGTCATGTTCTCGAGGAGGAAGCGAAGATGATGATGGCGGAGGGTGTGTTGATGCCGATGGCGACACGTCGAGGAAGAAACTGAGGTTGTTGAAAGATCAGGCCTTGGTGCTTGAAGAAACATTCAAGGAACATAACACTCTGAATCCTAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAGTCCTAGACAGGTTGAAGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAGGTGCTATGAGAATCTAACGGATGACAATAGGAGGCTACAGAAGGAAGTGCAAGAGCTAAGAGCATTGAAGTTTTCCCCACAGCTCTACATGCACATGAACCCTCCAACCACTCTTACAATGTGCCCTTCCTGTGAGCGTGTTGCTGTCTCATCTGCATCCTCCTCATCGGCCTCCATGCCTTCTGTGCCGCCTTCAGACAATCACAACCCATTAGGCCCTACCATCCGGCGGCCAGTGCCTGTCAACCCTTGGGCCGCGATGTCAATTCAGCACCGTCCCCCACCATAA 750 0.5027 MGLGASHVTNRSSEPLPFFFGIDVNLPPPSVAPCYEENGVSSPNSAVSSISAKRNEREENERGSCSRGGSEDDDGGGCVDADGDTSRKKLRLLKDQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTDDNRRLQKEVQELRALKFSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSASMPSVPPSDNHNPLGPTIRRPVPVNPWAAMSIQHRPPP 249
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium7157g00003 249 Gene3D - 92 141 - -
Vium7157g00003 249 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Vium7157g00003 249 MobiDBLite consensus disorder prediction 1 84 - -
Vium7157g00003 249 MobiDBLite consensus disorder prediction 37 51 - -
Vium7157g00003 249 Pfam HD-ZIP protein N terminus 8 58 IPR006712 GO:0005634
Vium7157g00003 249 SMART halz 143 186 IPR003106 GO:0006355|GO:0043565
Vium7157g00003 249 Pfam Homeodomain 87 141 IPR001356 GO:0003677
Vium7157g00003 249 MobiDBLite consensus disorder prediction 206 233 - -
Vium7157g00003 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 216 - -
Vium7157g00003 249 SUPERFAMILY Homeodomain-like 72 144 IPR009057 -
Vium7157g00003 249 FunFam Homeobox-leucine zipper protein 18 72 148 - -
Vium7157g00003 249 MobiDBLite consensus disorder prediction 52 69 - -
Vium7157g00003 249 CDD homeodomain 87 144 IPR001356 GO:0003677
Vium7157g00003 249 Pfam Homeobox associated leucine zipper 143 176 IPR003106 GO:0006355|GO:0043565
Vium7157g00003 249 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Vium7157g00003 249 SMART HOX_1 85 147 IPR001356 GO:0003677
Vium7157g00003 249 Coils Coil 149 176 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium7157g00003 Vium-Chr7157 25071 29207 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7157g00003 9 247 Homeobox Transcription Factor Family AT3G60390 62.934 6.36e-92 271
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium7157g00003 Homeodomain 1.3e-16 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7157g00003 K09338 - gmx:100810641 318.161