Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7157g00001 ATGTCTCTCCACCGCCATTTTTGCAGAACCTCAAAGCTATCAAAGATCCCTTGGAAGTACAAGCAGTTCGCCATAGCACAGGTGCAGAAGTCTGTTACTGATTATCTCCACGCCACGCGCTGCATTCCTTACGCCTTCGCTGATCAAATATCCAAGAACTCCAACAATGCCCTCATGAATCTCATCACCAAGCTCAGTGCTTTCTCCCCTCCCCACTATCCCCACAACCTTAACAAGTTCCTCAGGTACAACCCCATCAACGAATTCGAGTTCTTCTTTGAGAGCATTGGCATACACCCTTCAAAGTTCCCCTCTTTGTTTCCCCAGAACAAGTTCTTCTTTTCAGAAGATGAGACCCTTTTGGATACTGCTTGTGTTCTCAGCGAATATGGGTTTCCCTGGGACAAGCTTGGGGTGCTGTATGAGGAGAGTGGGTGGGTGTTCAACTGGGGTGCTTCTGAATTGAAGGATAGGCTTTGTGGGTTCAAAGGGTATGGTTTTTGCAATGTGCAGGTTGTGGGGATATGCTTGGCTTTCCCATTTGTGTTTGATGGCCAGAAGGGTGCTGAGGTTGAGGCTTTGTTTTGTGATCTGAGGTTGCTGTTTGGGAAGTTTGGTTTGGCTGAGTGTGTTGAAGAGAAGGGGAATGGTGTGGATGATTGGGTTGGGTTGTGTAGGAAGATAAGGTTGTTTTATGATTTGAATGGAGGTAAGAACATAGGGGAGTTAATTGGAGGTATCAATGGCGTTGGTGTAGGTGTTGTTGTTGAGCATGGGGAAGAGGAGTTGGTTCAAGCAATTGAGTATTTTTGTAGGTTTGGTGCGAAGAAAGAGGACGTGGCACGATTGATTTTGAATGGACCGGAATTGTTGGAACTTGTTTTGAACATGGGGAAGGTCAATGTGTTGAAGCTGTTGAAACACTTTGGAATGAGTTCCAATGATGTTAATATTGTTAAGAGGGACTATGCTCATGTGTTGGGGACAGTCAAGCTGTGTAACCTGCCAAATGTGATGAGAGCTTTGGGTTTACATGAGTGGTTCTTTGAGAAGATGAAGGATGGGAATCATAGTTTGTTGGTTAGTTTTGTCGCGAACAATCGCAAAGTGGACCGAGTTAAAGGTTATCCAAGTTTTTTGAAGGCTATTGAGGTGTCTAAAACTCCAATTCACAATATGAGTAAGTTGAACTTCTTGCATGGCATTGGCTTTGGAGAAAATGCTTTGACCATGTATATTTTCTCTTACATGCACGGAACAAGTGATGAGTTACAAAAGAGATTTGATTGCCTTCTACATCTTGGAATTGAGTTTTCAAAGCTCTGTAAAATGATCACGGTTCATCCCAAGATTCTTAGCCAAAACCCTGAAAGTTTGGAGCAAAAGATCAATTTCTTGTGTCAGGAAATGGGACAGTCACTTGAGATTTTGGTGACTTTTCCATCATTCTTGTGCTTTGACTTAGAGAATCGCATTAAGCCCAGGTATAAGTTCCATTTGTGGCTTATGGAAAAGGGTCTGTCTTCCAAAAGATATTCTATTGCAAGCATGGTTGCAACAAGTAACAGGAATTTAGTTTCCCGTGCTTTTAAAATCCACCCTGCTGCTCCGAAACATTGGTTTGAACAATTTTATCCCTGA 1641 0.4296 MSLHRHFCRTSKLSKIPWKYKQFAIAQVQKSVTDYLHATRCIPYAFADQISKNSNNALMNLITKLSAFSPPHYPHNLNKFLRYNPINEFEFFFESIGIHPSKFPSLFPQNKFFFSEDETLLDTACVLSEYGFPWDKLGVLYEESGWVFNWGASELKDRLCGFKGYGFCNVQVVGICLAFPFVFDGQKGAEVEALFCDLRLLFGKFGLAECVEEKGNGVDDWVGLCRKIRLFYDLNGGKNIGELIGGINGVGVGVVVEHGEEELVQAIEYFCRFGAKKEDVARLILNGPELLELVLNMGKVNVLKLLKHFGMSSNDVNIVKRDYAHVLGTVKLCNLPNVMRALGLHEWFFEKMKDGNHSLLVSFVANNRKVDRVKGYPSFLKAIEVSKTPIHNMSKLNFLHGIGFGENALTMYIFSYMHGTSDELQKRFDCLLHLGIEFSKLCKMITVHPKILSQNPESLEQKINFLCQEMGQSLEILVTFPSFLCFDLENRIKPRYKFHLWLMEKGLSSKRYSIASMVATSNRNLVSRAFKIHPAAPKHWFEQFYP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7157g00001 546 Pfam mTERF 421 523 IPR003690 GO:0003690|GO:0006355
Vium7157g00001 546 SMART mt_12 474 508 IPR003690 GO:0003690|GO:0006355
Vium7157g00001 546 SMART mt_12 442 473 IPR003690 GO:0003690|GO:0006355
Vium7157g00001 546 FunFam Transcription termination factor MTEF18, mitochondrial 380 540 - -
Vium7157g00001 546 PANTHER CGI-12 PROTEIN-RELATED 30 531 IPR003690 GO:0003690|GO:0006355
Vium7157g00001 546 Gene3D Transcription termination factor 3, mitochondrial 67 208 IPR038538 -
Vium7157g00001 546 Gene3D Transcription termination factor 3, mitochondrial 255 544 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7157g00001 Vium-Chr7157 7189 10540 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium7157g00001 mTERF 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7157g00001 - - var:108346236 961.829