Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7147g00026 ATGAGGTTTTCGGGTTACATAGCTCAATGGAGAAGCGCAGCGAAGGAAGCGATGGACCGCACAGGCATCACTGTGAATTTCCTGTGTTGGCTTCACTTCACCAGCAACTACCTCTGTTCCCCGGTTCACGCGTATGGGGTTAGCATGCTCCCCACTCTCAACGTCACCGGCGACATCCTCCTCGCCGACCACCTCTCCCCGCTGCTCGGCAACGTCGGCCACGGCGACTTGGTTCTCGTTCGGTCCCCTCTCAACCCTAAGATCAGGTTGACGAAGCGCGTCGTGGCCGTGGAAGGGGACACCGTCACTTACTTCGACCCGTTGCACTCTGAAGCTTCTCAAGTTGCAGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATTTACGCCTCCCGTGACTCACGCCATTTCGGTCCTGTCCCATATGGTCTCATTGAAGGAAAAGTGTTTTTCCGAGTATGGCCACCAAGTAGCTTTGGATTACTCGATCAATGA 501 0.5469 MRFSGYIAQWRSAAKEAMDRTGITVNFLCWLHFTSNYLCSPVHAYGVSMLPTLNVTGDILLADHLSPLLGNVGHGDLVLVRSPLNPKIRLTKRVVAVEGDTVTYFDPLHSEASQVAVVPKGHVWIQGDNIYASRDSRHFGPVPYGLIEGKVFFRVWPPSSFGLLDQ 166
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium7147g00026 166 Pfam Signal peptidase, peptidase S26 114 156 IPR019533 GO:0004252|GO:0006465
Vium7147g00026 166 Pfam Signal peptidase, peptidase S26 27 104 IPR019533 GO:0004252|GO:0006465
Vium7147g00026 166 SUPERFAMILY LexA/Signal peptidase 37 164 IPR036286 -
Vium7147g00026 166 Gene3D Umud Fragment, subunit A 35 162 - -
Vium7147g00026 166 CDD S26_SPase_I 40 151 IPR019533 GO:0004252|GO:0006465
Vium7147g00026 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium7147g00026 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium7147g00026 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium7147g00026 166 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 9 165 - -
Vium7147g00026 166 FunFam Inner membrane protease subunit 1 35 163 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium7147g00026 Vium-Chr7147 262366 271433 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7147g00026 49 164 MADS-box Gene Family AT1G29960 50.427 1.62e-36 121
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7147g00026 K09647 - cave:132173278 255.758