LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium7147g00025	ATGAGGTTTTCGGGTTACATAGCTCAATGGAGAAGCGCAGCGAAGGAAGCGATGGACCGCACAGGCATCACTGTGAATTTCCTGTGTTGGCTTCACTTCACCAGCAACTACCTCTGTTCCCCGGTTCACGCGTATGGGGTTAGCATGCTCCCCACTCTCAACGTCACCGGCGACATCCTCCTCGCCGACCACCTCTCCCCGCTGCTCGGCAACGTCGGCCACGGCGACTTGGTTCTCGTTCGGTCCCCTCTCAACCCTAAGATCAGGTTGACGAAGCGCGTCGTGGCCGTGGAAGGGGACACCGTCACTTACTTCGACCCGTTGCACTCTGAAGCTTCTCAAGTTGCAGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATTTACGCCTCCCGTGACTCACGCCATTTCGGTCCTGTCCCATATGGTCTCATTGAAGGAAAAGTGTTTTTCCGAGAGTTGTGCATAGTCAACATCGAAAAGACATTCGCTAAGCTCCGACATTAA	513	0.5419	MRFSGYIAQWRSAAKEAMDRTGITVNFLCWLHFTSNYLCSPVHAYGVSMLPTLNVTGDILLADHLSPLLGNVGHGDLVLVRSPLNPKIRLTKRVVAVEGDTVTYFDPLHSEASQVAVVPKGHVWIQGDNIYASRDSRHFGPVPYGLIEGKVFFRELCIVNIEKTFAKLRH	170

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium7147g00025	170	SUPERFAMILY	LexA/Signal peptidase	37	154	IPR036286	-
	Vium7147g00025	170	Pfam	Signal peptidase, peptidase S26	113	153	IPR019533	GO:0004252\|GO:0006465
	Vium7147g00025	170	Pfam	Signal peptidase, peptidase S26	27	105	IPR019533	GO:0004252\|GO:0006465
	Vium7147g00025	170	Gene3D	Umud Fragment, subunit A	35	168	-	-
	Vium7147g00025	170	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	37	53	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vium7147g00025	170	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	90	102	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vium7147g00025	170	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	118	137	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vium7147g00025	170	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	9	154	-	-
	Vium7147g00025	170	CDD	S26_SPase_I	40	151	IPR019533	GO:0004252\|GO:0006465
	Vium7147g00025	170	FunFam	Inner membrane protease subunit 1	35	163	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium7147g00025	Vium-Chr7147	262366	271433	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium7147g00025	49	154	MADS-box Gene Family	AT1G29960	49.533	4.79e-32	109

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium7147g00025	K09647		-	cave:132173278	233.802