Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7147g00016 ATGAGGAAGGCATTGATTATAGCCTGTTCCATAACCATATGCTTCATCGCTTTTGTGATATCCAAGATCGTTATTTCAGTTCTCCTCTACAAAAGATGGAGAAGAAAACAGATGATCCATGAAGAAGGTTATCCAGGAGGAAAGATAGTTATATTTAGGTCCTCAGTGCTTAAATCTCTCACAGCTGATGCGATCTTAAAGAAGACACAGAAACTGAGCAACAAGGACATCATTGGATCAGGTGGTTATGGTGTGGTCTATGGACTAAAACTAGATGAATCCACAGCCTTGGCAGTAAAAAGACTAAACCGTGGAACTGCAGAAAGAGATAAAGGCTTTGAGAGAGAGTTGCAAGCAATGGCAGACATAAAACACCGCAACATTGTGACCCTTCATGGATATTACACTGCACAACACTACAATCTTCTCATATATGAGCTAATGCCCAATGGAAGTTTGGACTCCTTTTTGCATGGAAGATGGAGAGACAGGAAGGTTTTGGATTGGCCAACCAGATATAGAATAGCTGCAGGTGCAGCTAGAGGAATATCATATCTTCATCATGATTGCATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAACATATTGTTGGATGAAAATATGGATGCTCGAGTTTCTGATTTTGGATTAGCCACTTTGATGCAACCAAATAAAACTCATGTCTCAACATTTGTGGCCGGAACTTTTGGATACTTGGCACCTGAATATTTTGATACTGGAAGAGCAACACTCAAAGGGGATGTTTACAGCTTTGGAGTTGTTTTACTGGAGCTTTTAACTGGGAAGAAACCCAGTGATGAAGCATTTATGGAAGAGGGAACAATGCTTGTCACATGGGTGAAGGCTGTTGTTCGACAGAAGAAGGAGGAGTTCGCCCTTGATAGTAGCTTAGGAACTTGTTCAATGGAAGAGGTAAATAAGGTGTTCAGCATTGCAATGATGTGTCTTGAACCAGATCCTTTGAATAGGCCAACCATGGCTGATGTTGTCAAAATGCTTGACAAAACAGAAGTAGATAAACTTGTTACAGAATCCTGA 1065 0.4066 MRKALIIACSITICFIAFVISKIVISVLLYKRWRRKQMIHEEGYPGGKIVIFRSSVLKSLTADAILKKTQKLSNKDIIGSGGYGVVYGLKLDESTALAVKRLNRGTAERDKGFERELQAMADIKHRNIVTLHGYYTAQHYNLLIYELMPNGSLDSFLHGRWRDRKVLDWPTRYRIAAGAARGISYLHHDCIPHIIHRDIKSSNILLDENMDARVSDFGLATLMQPNKTHVSTFVAGTFGYLAPEYFDTGRATLKGDVYSFGVVLLELLTGKKPSDEAFMEEGTMLVTWVKAVVRQKKEEFALDSSLGTCSMEEVNKVFSIAMMCLEPDPLNRPTMADVVKMLDKTEVDKLVTES 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7147g00016 354 FunFam Receptor-like serine/threonine-protein kinase 43 147 - -
Vium7147g00016 354 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Vium7147g00016 354 Pfam Protein kinase domain 74 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7147g00016 354 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 148 354 - -
Vium7147g00016 354 Gene3D Transferase(Phosphotransferase) domain 1 148 353 - -
Vium7147g00016 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vium7147g00016 354 Gene3D Phosphorylase Kinase; domain 1 36 147 - -
Vium7147g00016 354 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 346 - -
Vium7147g00016 354 SUPERFAMILY Protein kinase-like (PK-like) 53 342 IPR011009 -
Vium7147g00016 354 ProSiteProfiles Protein kinase domain profile. 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7147g00016 354 SMART serkin_6 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7147g00016 Vium-Chr7147 194570 197811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7147g00016 3 343 Receptor kinase-like Gene Family AT2G35620 44.186 7.90e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vium7147g00016 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7147g00016 - - ahf:112703495 550.821