Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7147g00008 ATGGAAGAGGAAGGCACGGATTCTCGAAAGCAAGCGAGGCTCGCAATCATGGAATTGGCCAACATGATAAGCGTTCCGATGGCCCTAAACGCCGTCGTTCGCCTCAACGTTGCCGACGCCATCTGGAACTCCGGCGCCAACATCCCCATCTCCGCCGCCCAGATCCTCCCCCGCATCCTCCCCGCCGGCGACGCCGAGAACCTCCAGCGACTCCTCCGCATCCTCACCAGCTACGGCGTCTTCCACGAGCACATCGACGCCGGTGAACGCAAGTACTCCCTCACCGACGTCGGCAAAACTCTTGTCACTGACGAGCAAGGCCTCTCCTACGGTGCTTACGTGCTTCAACACCACCAGGACGCGCTGATGCGAGCGTGGACATTGGTTCACGAGGCAGTGGTGGACCCTACGAAGGAGCCGTTCGAGAGGGCGAACGGAGAGGGAGCGTATGGGTATTATCTGAAGCAGGAAGAAATGAACGAGTTGATGGTGAAGGCCATGTCAGGGGTGTCAGTGCCCTTCATGAAGGCCATGTTAGAGGGCTACGATGGCTTCCAAGGTGTGGAGAAGCTGGTGGACGTGGGTGGTAGTGGCGGTGACTGCCTGCGCATGATCCTGCAGAAACACCCCACCATCAAGGAGGGGATCAACTTCGACCTCCCTGAAGTTGTGGCCAAAGCACCACCAACCCCATATGTAACCCATGTGGGTGGTGACATGTTCAAATCTATTCCCCAAGGAGACGCTATCTTCATGAAGTGGGTGCTAACAACATGGACGGACGAGGAAATAAAGGAGATAATGCGGAACTGTCACAAGGCACTTCCTGAGGGAGGGAAAGTGATAGCTTGTGAGCCAGTGCTGCCAGAGCACTCAGATGAGAGTCACAGAACAAGGGCGTTGCTTGAGGGTGACATTTTTGTGATGACAATCTACAGAGCCAAGGGGAAGCACAGGACTGAAGAACAGTTCAGGCAGTTAGCCATTGATGCAGGTTTCCCTCTTTTCAGAGCCATCAATGTTGACCATTTTTACACTGTTCTTGAGTTTCAGAAATGA 1059 0.5467 MEEEGTDSRKQARLAIMELANMISVPMALNAVVRLNVADAIWNSGANIPISAAQILPRILPAGDAENLQRLLRILTSYGVFHEHIDAGERKYSLTDVGKTLVTDEQGLSYGAYVLQHHQDALMRAWTLVHEAVVDPTKEPFERANGEGAYGYYLKQEEMNELMVKAMSGVSVPFMKAMLEGYDGFQGVEKLVDVGGSGGDCLRMILQKHPTIKEGINFDLPEVVAKAPPTPYVTHVGGDMFKSIPQGDAIFMKWVLTTWTDEEIKEIMRNCHKALPEGGKVIACEPVLPEHSDESHRTRALLEGDIFVMTIYRAKGKHRTEEQFRQLAIDAGFPLFRAINVDHFYTVLEFQK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7147g00008 352 Gene3D Vaccinia Virus protein VP39 106 352 IPR029063 -
Vium7147g00008 352 SUPERFAMILY "Winged helix" DNA-binding domain 8 104 IPR036390 -
Vium7147g00008 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 350 IPR029063 -
Vium7147g00008 352 Gene3D - 1 105 IPR036388 -
Vium7147g00008 352 FunFam Caffeic acid 3-O-methyltransferase 1 106 - -
Vium7147g00008 352 PANTHER O-METHYLTRANSFERASE 17 344 IPR016461 GO:0008168
Vium7147g00008 352 PIRSF O-mtase 1 352 IPR016461 GO:0008168
Vium7147g00008 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 352 IPR016461 GO:0008168
Vium7147g00008 352 Pfam O-methyltransferase domain 126 333 IPR001077 GO:0008171
Vium7147g00008 352 FunFam Caffeic acid 3-O-methyltransferase 107 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7147g00008 Vium-Chr7147 86038 89550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7147g00008 1 352 Monolignol Biosynthesis Gene Families AT3G53140 74.095 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7147g00008 - - gmx:100784957 634.024