Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7147g00003 ATGCAGCAAGATCAGCTGAAGAAGGATATCAAAGAGTTAGAGTTTTTCACCGAGTATGGGGATGCCAACAGATACAAGATTCTTGAAGTTGTTGGGAAGGGTAGCTATGGAGTTGTTTGTTCAGCAATTGATACACACACTGGGGGAAAGGTTGCAATAAAGAAGATTCATGATATTTTTGAACATATCTCTGATGCCATTAGAATCCTAAGGGAAGTCAAGTTGCTTAGACTTTTAAGACACCCTGATATTGTTGATATTAAGCGGATCATGTTACCGCCTTCAAAGAGGGAGTTTAAAGATATTTATGTTGTCTTTGAACTCATGGAGTCTGATCTCCATCAGGTCATCAAAGCTAATGACGACTTGACCCGAGAGCACCATCAGTTTTTTCTTTATCAGATGCTACGTGCATTGAAGTATATGCATACAGCTAATGTATATCACAGAGACCTTAAACCCAAGAATATCCTGGCAAATGCAAACTGCAAACTGAAAGTTTGTGATTTTGGTTTGGCTAGAGTTGCGTTTAATGATGCCCCAACAACAACATTTTGGACGGATTGTGTTGCTACAAGATGGTACAGAGCCCCAGAGCTGTGTGGCTCCTTCTTTTCTAAGTATACACCGGCAATTGATATATGGAGCATCGGATGCATTTTTGCAGAGGTGTTGACAGGAAAGCCACTATTTCCTGGAAAAAGTGTTGTGCATCAATTAGATTTGATTACCGATCTTCTTGGGACACCATCTCCAGAAACTATTGCAGGAGTCCGAAATGACAAGGCTAGGAAGTACTTGATGGAAATGCGGAAGAAATCTCCCGTGCCATTTGAACAGAAATTTCCAAATGCAGATCCATTGGCACTGCGTCTATTGCAAAGGCTTTTAGCATTTGATCCAAAGGATCGACCAACAGCTCAAGAGGCACTATCCGATACATTCTTTAAGGGTTTGGCCAAAGTTGAGAGAGAACCGTCGTGTCAGCCAATTTCACGATTAGAATTCGAGTTTGAGAGGAGACGGGTGACAAAGGACGAAGTTAGGGAACTAATATATCGGGAAATACTGGAATATCATCCCCAGTTGCTTAAAGATTACATGAATGGAACTGAAGGCACTCACTTCCTTTACCCTAGTGCAATAGATCAATTCAGAAAGCAATTTGCTTATCTTGAGGAAAATCATGGTAAAAGTGGTCCTGTGATTCCTCCAGAAAGGAAGCATGTCTCCCTTCCAAGGTCTACTGTTCACTCTAGTACAATTCCTCCTACTACACAGCCATCTTTTGCTTCATACGAGAGCAAGCAAATGGTGGCAGAGGCATCAAAGATTTCGAGATCAGTAGAATCAAATTCTGGAAGTCAGTTAAGGAGTTCGCGACCTCCGCCAAGAGTGCCAGCAGCCAAACCAGGTCGAATAGTAGGGCCAGTTCTGCACTATGACAATGGGAGAACCATAAAAGATGCTTATGACCAAAGGATCTTCTACCGAAACTCACTTCCTCATGCCGTCTCTCCACACTGTTTCCATAGGGTGCAACCAGCTAACACCAAAGCTACATCAGAAACATACAAAGATATTTCACAAGGCAAACATCAACTCTCTTGCCAGCAGTGTAGCATGCCAGCCAGACCAGCTATTGATCTTAACACTAACCCATACTATCAACAGGGGAAGAGAGACCACTTAAATGATCCTGTTGGTTCCATTGATGCAAAACTGCTGCAGGCACAATCTCAATTTGGTGCAGTTGGTGCTGCAGCAGTAGCTGTTGCTGCTCATAGGCATTCAGGGAGCTTTCACTATGGATTGTCATAG 1821 0.4267 MQQDQLKKDIKELEFFTEYGDANRYKILEVVGKGSYGVVCSAIDTHTGGKVAIKKIHDIFEHISDAIRILREVKLLRLLRHPDIVDIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDAPTTTFWTDCVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPSPETIAGVRNDKARKYLMEMRKKSPVPFEQKFPNADPLALRLLQRLLAFDPKDRPTAQEALSDTFFKGLAKVEREPSCQPISRLEFEFERRRVTKDEVRELIYREILEYHPQLLKDYMNGTEGTHFLYPSAIDQFRKQFAYLEENHGKSGPVIPPERKHVSLPRSTVHSSTIPPTTQPSFASYESKQMVAEASKISRSVESNSGSQLRSSRPPPRVPAAKPGRIVGPVLHYDNGRTIKDAYDQRIFYRNSLPHAVSPHCFHRVQPANTKATSETYKDISQGKHQLSCQQCSMPARPAIDLNTNPYYQQGKRDHLNDPVGSIDAKLLQAQSQFGAVGAAAVAVAAHRHSGSFHYGLS 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7147g00003 606 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Vium7147g00003 606 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vium7147g00003 606 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7147g00003 606 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7147g00003 606 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vium7147g00003 606 MobiDBLite consensus disorder prediction 414 473 - -
Vium7147g00003 606 FunFam Mitogen-activated protein kinase 15 119 - -
Vium7147g00003 606 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 356 - -
Vium7147g00003 606 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Vium7147g00003 606 CDD STKc_TDY_MAPK 24 361 - -
Vium7147g00003 606 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vium7147g00003 606 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7147g00003 606 MobiDBLite consensus disorder prediction 414 460 - -
Vium7147g00003 606 FunFam Mitogen-activated protein kinase 111 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7147g00003 Vium-Chr7147 25830 34775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7147g00003 1 604 MAP Kinase Gene Family AT1G53510 70.323 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vium7147g00003 Pkinase 1.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7147g00003 - - gmx:100800878 1108.59