Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7142g00002 ATGCTCCCTTTGAAGGACCTTGTTGATTCTATTGCTGATAAGTTGAAGGAGCAGTTGGTTGAGGGCTCTCAATTGTATGGAAAAAAGAATGAAAGAGTGTGTCCTTGCAAAATATTGAGAGTGATGCAGAAAGATGCTGAAACTGTGAGCTATGTGGTGGCTTGGCTAGATGAAAGCAATAATGTTATTGAAAGAGCAGAAGTCAGTTCTCAAGATTTGGTGCAGAAGAAGCCACCTTTTAGTAGAAATATTTTGAAGTCTTTTGTCCGTGAATGTACATATCTAAATGCTCCTTGGGTTTTACATGATAAACTTGCAAAATATCATGGAATCTCAACTGACATTCCAGAGGAGTTAAGAGGAAAGGTTTCCTTTAACAATGGACTCGTGGTCTTCACCAAAAAAAGAAAGCATGAGGAAGAGTCTATCAAATATCCAATTGATGATCTATTAGTGAAGCCTAGTCCAGATGATCCAGTTTTCAGTAGTCGTCCTTCTCCATCAAGAGACTTTAATGTTCCAATTCATTGTGTAGGGGATCTCTTAACGGTTTGGGACTTTTTTATGTCTTTTGGTAAACTGTTACAATTATCACCGTACTCTCTCAAAGATTTTGAAAACGCAATCTGTCACAAGGATAGCAATGTTGTTCTCCTGGTGGAATCTCTTGCAGTACTCTTTCGTGTGCTCATCAAAGGTGATGATGAATACTATGCAGCTGTTCAAGATAAATTACCGAAGAAGATTACAATGATTAGTTGGAAAGACTATTTATGCAAGTTTTTAGAAATGATCAAAATTCCCAAGCTGCAGCAGTATGAAGCAACAATTAAACGGGGACGTTATAGCTATGTAGATGTCAATGCTAAATTAGAAATCTTTTGCGAATTAGTCAATCGAGCCCTTGATACAGCTATTGTCAGGGAAAAATTGCATGAGTTTATTGAACAAAGGCGGGTACTGGGAGCTGCTAAAAGGGAAGAAGCAATTGAAGCTTCTGCAAAGAGAAGAAAAGTAAAGGAGCAGTTGAAAGCTGATTCTGGAAGCACCTGTGGTGAGAATGGGCATGATCTTGATCAGGATGCAACTGTCTCAGCTGATAATAGTCACAGAATACAGAATGGTAGTATTAGAAAGAATAGAAACAGTGAGACAGAATCATCTACGCAAAAATATGCATTCGATAGTGGTATCAAGCATTCAAACCTTGCTTCAAAAATGTCAGCTGAAAAGTTTGATTCTGAGCTTAATCGATCTGCAGTATGCGGAAAAGTATACAATAGAAAGGAATCACAGAAACAACCAATAGGTGATAAGGATCAATCAGAGAAAAGCTACGAACAAAGGAGACAATATTTTGATCGGGAGATAGAGAAATGGTGTGTTCGTACAAGTTTCCTAGGTATGGACAGATATTATAATAGGTATTGGTGGTTTTACCGTGATGGAAGGATATTTGTTGAAAGTCCTGAATCCAATGAGTGGGGATACTACAGTAGCAAAGGAGAGCTTGATGGATTGACGAGTTCACTGAATTGCAAAGGCGAGAGGGAGAGGGCACTGCTAAAACAACTGAAAAAATATTATGGTAGAATATGCTCGGAATTGCAGAAAAATTCAAAGGATTTGTTGCATAAGACTACCCTGGATGATTCTATGGTCAGAAGGTCTACACGTGTTCGCGCACCACCTAGGAAAAATCCTGCCAAGGCTTTCCTTAGATATGTAAACAAGTGGAAAGAAGAGTAA 1749 0.3854 MLPLKDLVDSIADKLKEQLVEGSQLYGKKNERVCPCKILRVMQKDAETVSYVVAWLDESNNVIERAEVSSQDLVQKKPPFSRNILKSFVRECTYLNAPWVLHDKLAKYHGISTDIPEELRGKVSFNNGLVVFTKKRKHEEESIKYPIDDLLVKPSPDDPVFSSRPSPSRDFNVPIHCVGDLLTVWDFFMSFGKLLQLSPYSLKDFENAICHKDSNVVLLVESLAVLFRVLIKGDDEYYAAVQDKLPKKITMISWKDYLCKFLEMIKIPKLQQYEATIKRGRYSYVDVNAKLEIFCELVNRALDTAIVREKLHEFIEQRRVLGAAKREEAIEASAKRRKVKEQLKADSGSTCGENGHDLDQDATVSADNSHRIQNGSIRKNRNSETESSTQKYAFDSGIKHSNLASKMSAEKFDSELNRSAVCGKVYNRKESQKQPIGDKDQSEKSYEQRRQYFDREIEKWCVRTSFLGMDRYYNRYWWFYRDGRIFVESPESNEWGYYSSKGELDGLTSSLNCKGERERALLKQLKKYYGRICSELQKNSKDLLHKTTLDDSMVRRSTRVRAPPRKNPAKAFLRYVNKWKEE 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7142g00002 582 ProSiteProfiles DDT domain profile. 175 236 IPR018501 -
Vium7142g00002 582 MobiDBLite consensus disorder prediction 431 447 - -
Vium7142g00002 582 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 462 528 IPR028941 -
Vium7142g00002 582 MobiDBLite consensus disorder prediction 427 447 - -
Vium7142g00002 582 SMART testlast3 175 236 IPR018501 -
Vium7142g00002 582 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 136 580 - -
Vium7142g00002 582 MobiDBLite consensus disorder prediction 347 391 - -
Vium7142g00002 582 MobiDBLite consensus disorder prediction 341 391 - -
Vium7142g00002 582 Pfam DDT domain 176 232 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7142g00002 Vium-Chr7142 14143 19008 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vium7142g00002 WSD 4.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7142g00002 - - gmx:100784607 890.182